Research Datasets: Recent submissions

  • Database 
    Justi, Silvia A. (Smithsonian National Museum of Natural History, 2023)
    See https://github.com/silviajusti/publications/edit/2023_update/SCO_pipeline.md
  • Hellbender skin microbiome 16S OTU table 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Hellbender skin Bd transcriptome gene counts matrix 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Data for Boulder Diversity in the Nightingale Region of Asteroid (101955) Bennu and Predictions for Physical Properties of the OSIRIS-REx Sample 
    Jawin, Erica R.; Ballouz, Ronald; Ryan, Andrew; Kaplan, Hannah; McCoy, Timothy J.; Al Asad, Manar M.; Molaro, Jamie; Rozitis, Benjamin; Keller, Lindsay (Smithsonian National Air and Space Museum, 2023)
    Dataset accompanying Manuscript titled Boulder Diversity in the Nightingale Region of Asteroid (101955) Bennu and Predictions for Physical Properties of the OSIRIS-REx Sample. Table includes data associated with each boulder ...
  • Hellbender skin prokaryote transcriptome BLAST nr annotations 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Hellbender skin Bd transcriptome BLAST nr annotations 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Hellbender skin microbiome 16S metadata 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Hellbender skin microbiome 16S Anti-Bd OTU list 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Hellbender skin prokaryote transcriptome BLAST xml 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Hellbender skin prokaryote transcriptome 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Hellbender skin Bd transcriptome BLAST xml 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Hellbender skin microbiome 16S OTU tree 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Dataset: Novel genomic resources contribute to the systematics of threatened arboreal deer mice of the genus <i>Habromys</i> Hooper & Musser, 1964 (Cricetidae, Neotominae) within a neotomine–peromyscine phylogeny 
    Castañeda-Rico, Susette; Parker, Lillian D.; Sánchez, Evelyn; Rivas-Trasvina, Sheccid; Hawkins, Melissa T. R.; Edwards, Cody W.; Maldonado, Jesús E. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    This dataset contains two files: 1. Habromys simulatus_MZFC10104.fasta Description: Fasta format sequence of the partial mitogenome of <i>Habromys simulatus</i> (MZFC10104/HBR031) obtained from raw data published by ...
  • Earthquake Damage to the Tinmel Mosque, Morocco 
    Hanson, Katharyn; Bender, Tom; Daniels,Brian, I.; Bassett, Hayden; Welsh, William F.; Fitzgerald, Kaitlyn; Gunter-Bassett, Madeleine; Maher, Abigail; Wegener, Corine (Smithsonian Cultural Rescue Initiative, 2023)
    On 8 September 2023, a magnitude 6.8 earthquake caused extensive damage to the Tinmel Mosque in Morocco. On 13 September 2023, satellite imagery analysis conducted by the Smithsonian Cultural Rescue Initiative (SCRI), Penn ...
  • Project repository for comparing north American bird distribution shifts 
    Huang, Qiongyu (Smithsonian National Zoo and Conservation Biology Institute, 2022)
    We provide data and R script here for our project titled " Modeled distribution shifts of North American birds over four decades based on suitable climate alone do not predict observed shifts " Qiongyu Huang1, Brooke L. ...
  • CLI Invasive Field Survey - Analysis Format.csv 
    Fergus, Craig (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    Observation records from field surveys conducted in the summers of 2016 and 2017 in northern Virginia
  • Flood Damage to the Old City of Derna, Libya 
    Hanson, Katharyn; Bender, Thomas; Welsh, William F.; Bassett, Hayden; Daniels,Brian, I.; Gunter-Bassett, Madeleine; Fitzgerald, Kaitlyn; Maher, Abigail; Cil, Deniz; Aronson, Jacob; Wegener, Corine (Smithsonian Cultural Rescue Initiative, 2023)
    On 11 September 2023, flooding caused massive damage to the historic core of Derna, Libya.[1] Satellite imagery analysis conducted by the Smithsonian Cultural Rescue Initiative at the Smithsonian Institution (SCRI), Penn ...
  • Data Repository/Supplemental File for Late Drainage Along Portions of Samara Valles 
    Grant, John A. (Smithsonian National Air and Space Museum, 2023)
    • PowerPoint file includes locations of cross sections, data used for estimating channel width, depth, and gradient. • Calculations of discharge using the above estimates for each cross sections after methods described ...
  • Cultural Heritage Monitoring Lab Rapid Report: Damage to the Sudan National Museum (18 May 2023) 
    Gunter-Bassett, Madeleine; Bassett, Hayden; Hanson, Katharyn; Welsh, William F.; Fitzgerald, Kaitlyn; Maher, Abigail; Aronson, Jacob; Cil, Deniz; Averyt, Katelynn; Carroll, Colleen; Wegener, Corine; Daniels,Brian, I. (Smithsonian Cultural Rescue Initiative, 2023)
    In this report the Cultural Heritage Monitoring Lab (CHML) with Smithsonian Cultural Rescue Initiative (SCRI) confirmed damage to the Sudan National Museum in Khartoum. Among other collections, the museum maintains an ...
  • CLI Invasive Analysis Model Coefficient Results 
    Fergus, Craig (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    Tabular results displaying coefficient values and bootstrap confidence interval values from the potential and realized distribution analysis completed for multiple invasive plant species in northern Virginia. Please refer ...

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