Research Datasets: Recent submissions

  • 2021 Weekly Water Quality Campaign Data, Bocas del Toro, MarineGEO, Smithsonian Tropical Research Institute 
    Boza, Ximena; Bravo, Viviana D.; Cesar, Carolina I.; Rich, Roy L.; Cheng, Selina; Lonneman, Michael; Collin, Rachel (Smithsonian Environmental Research Center, 2023)
    2021 water quality data collected on a weekly basis using a YSI EXO2 multiparameter sonde and Secchi disk at 8 sites surrounding the MarineGEO Bocas del Toro observatory (Bocas del Toro Research Station, Smithsonian Tropical ...
  • 2022 Weekly Water Quality Campaign Data, Bocas del Toro, MarineGEO, Smithsonian Tropical Research Institute 
    Boza, Ximena; Bravo, Viviana D.; Cesar, Carolina I.; Rich, Roy L.; Cheng, Selina; Lonneman, Michael; Collin, Rachel (Smithsonian Environmental Research Center, 2023)
    2022 water quality data collected on a weekly basis using a YSI EXO2 multiparameter sonde and Secchi disk at 8 sites surrounding the MarineGEO Bocas del Toro observatory (Bocas del Toro Research Station, Smithsonian Tropical ...
  • 2023 Meteorological Data, Upper Chesapeake Bay, MarineGEO, Smithsonian Environmental Research Center 
    Benson, Sam; Rich, Roy L.; Cheng, Selina; Lonneman, Michael; Neale, Patrick J. (Smithsonian Environmental Research Center, 2023)
    2023 meteorological data collected on WXT536, PTB110, and LI-190R instrumentation at the MarineGEO Upper Chesapeake Bay observatory (Smithsonian Environmental Research Center, Edgewater, MD, USA). Location: 38.886928, -76.540172
  • Bennett et al 2022_Ciencias sociales para la conervacion en paisajes terrestres y marinos laborables.pdf 
    Bennett, Nathan; Dodge, Molly; Akre, Thomas S.; Canty, Steven W. J.; Chiaravalloti, Rafael; Dayer, Ashley; Deichmann, Jessica L.; Gill, David; McField, Melanie; McNamara, James; Murphy, Shannon; Nowakowski, A. Justin; Songer, Melissa A. (Smithsonian Environmental Research Center, 2023)
    La traduccion del articulo, Social science for conservation in working landscapes and seascapes, publicado en Frontiers in Conservation Science (https://doi.org/10.3389/fcosc.2022.954930)
  • A Photo Guide to Deep-Sea Fishes of Coral, Canyon and Cold Seep Habitats along the U.S. Atlantic Margin 
    McIver, Tara C.; Quattrini, Andrea M. (Zenodo, 2022)
    Deep-sea fishes (&gt; 200 m) are diverse along the U.S Atlantic margin, but few in situ photos are<br> publicly available for many confirmed identifications. Recent cruises (R/V Atlantis AT41, NOAA<br> Ship Ron Brown RB1903, ...
  • Data and Code: Methane Reduction Potential of Tidal Wetland Restoration 
    Holmquist, James R.; Eagle, Meagan; Molinari, Rebecca Lee; Nick, Sydney K.; Stachowicz, Liana C.; Kroeger, Kevin D. (Smithsonian Environmental Research Center, 2023)
    This repository contains code and data files for a publication titled: Mapping Methane Reduction Potential of Tidal Wetland Restoration in the United States.The zip file contains a replicable R workflow that can be implemented ...
  • Heart rate monitoring of captive scimitar-horned oryx 
    Moraes, Rosana; Leimgruber, Peter; Stabach, Jared; Laske, Timothy G.; Songsasen, Nucharin (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    Heart rate biologging has been successfully used in wildlife to study changes in metabolic rates, responses to natural or human-caused stressors (e.g., hunting, landscape of fear), stress, and animal welfare. Yet, applications ...
  • Annotation for Asian Elephant Em538 10x+Hi-C Genome Assembly 
    Prado, Natalia; Armstrong, Ellie E.; Brown, Janine L.; Goldenberg, Shifra; Leimgruber, Peter; Pearson, Virginia R.; Maldonado, Jesús E.; Campana, Michael G. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    Genome sequence (Em538.fa.gz) and AUGUSTUS v. 3.3.2 gene predictions (Em538.gff) for the Em538 ("Kandula") 10x+Hi-C assembly (NCBI Accession: JAOTIA020000000). Also provided are the InterProScan v. 5.60-92.0 functional ...
  • Dataset for "High-resolution canid identification from scats using SNP capture: the FAECES* method" 
    Parker, Lillian; Campana, Michael G. (Smithsonian National Zoo and Conservation Biology Institute, 2022)
    Two capture bait sets: one to enrich for ~20,000 SNP loci polymorphic in African wild dogs (<i>Lycaon pictus</i>) and one to enrich for ~800 SNPs polymorphic in desert kit fox (<i>Vulpes arsipus</i>) and coyotes (<i>Canis ...
  • Mito-nuclear discordance within Anthozoa, with notes on unique properties of their mitochondrial genomes 
    Quattrini, Andrea M. (Smithsonian National Museum of Natural History, 2023)
    Data that accompanies paper in review at Scientific Reports
  • Evidence of Ice-Rich Layered Deposits in the Medusae Fossae Formation of Mars 
    Watters, Thomas R. (Smithsonian National Air and Space Museum, 2023)
    Excel spreadsheets for plots, and MARSIS radargrams.
  • Supplemental Data for "Gene expression reveals immune response strategies of naïve Hawaiian honeycreepers experimentally infected with introduced avian malaria" 
    Paxton, Kristina L.; Cassin-Sackett, Loren; Atkinson, Carter T.; Videvall, Elin; Campana, Michael G.; Fleischer, Robert C. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    Supplemental tables and figures for "Gene expression reveals immune response strategies of naïve Hawaiian honeycreepers experimentally infected with introduced avian malaria"
  • Hellbender skin transcriptome metadata 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Hellbender skin transcriptome BLAST xml 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Plot Metadata from "Los bosques tropicales estacionalmente secos del Perú: un re-análisis de sus patrones de diversidad y relaciones florísticas" 
    Linares, Reynaldo; Huamantupa-Chuquimaco, Isau; Marcelo-Peña, Jose Luis (Smithsonian National Zoo and Conservation Biology Institute, 2022)
    Metadata of quantitative inventories in seasonally dry tropical forests of Peru used in the paper "Los bosques estacionalmente secos del Perú: Un re-análisis de sus patrones de diversidad y relaciones florísticas" published ...
  • Hellbender skin transcriptome BLAST nr annotations 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Hellbender skin transcriptome 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Hellbender skin transcriptome isoform counts matrix 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Hellbender skin Bd transcriptome metadata 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Hellbender skin prokaryote transcriptome isoform counts matrix 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...

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