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Browsing Department of Vertebrate Zoology by Author "Kimball, Rebecca T."

Browsing Department of Vertebrate Zoology by Author "Kimball, Rebecca T."

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  • Are Transposable Element Insertions Homoplasy Free?: An Examination Using the Avian Tree of Life 
    Han, Kin-Lan; Braun, Edward L.; Kimball, Rebecca T.; Reddy, Sushma; Bowie, Rauri C. K.; Braun, Michael J.; Chojnowski, Jena L.; Hackett, Shannon J.; Harshman, John; Huddleston, Christopher J.; Marks, Ben D.; Miglia, Kathleen J.; Moore, William S.; Sheldon, Frederick H.; Steadman, David W.; Witt, Christopher C.; Yuri, Tamaki (2011)
  • Duplication and Accelerated Evolution of Growth Hormone Gene in Passerine Birds 
    Yuri, Tamaki; Kimball, Rebecca T.; Braun, Edward L.; Braun, Michael J. (2008)
  • Earth history and the passerine superradiation 
    Oliveros, Carl H.; Field, Daniel J.; Ksepka, Daniel T.; Barker, F. K.; Aleixo, Alexandre; Andersen, Michael J.; Alström, Per; Benz, Brett W.; Braun, Edward L.; Braun, Michael J.; Bravo, Gustavo A.; Brumfield, Robb T.; Chesser, R. Terry; Claramunt, Santiago; Cracraft, Joel; Cuervo, Andrés M.; Derryberry, Elizabeth P.; Glenn, Travis C.; Harvey, Michael G.; Hosner, Peter A.; Joseph, Leo; Kimball, Rebecca T.; Mack, Andrew L.; Miskelly, Colin M.; Peterson, A. T.; Robbins, Mark B.; Sheldon, Frederick H.; Silveira, Luís Fábio; Smith, Brian Tilston; White, Noor D.; Moyle, Robert G.; Faircloth, Brant C. (2019)
    Avian diversification has been influenced by global climate change, plate tectonic movements, and mass extinction events. However, the impact of these factors on the diversification of the hyperdiverse perching birds ...
  • Homoplastic microinversions and the avian tree of life 
    Braun, Edward L.; Kimball, Rebecca T.; Han, Kin-Lan; Iuhasz-Velez, Naomi R.; Bonilla, Amber J.; Chojnowski, Jena L.; Smith, Jordan V.; Bowie, Rauri C. K.; Braun, Michael J.; Hackett, Shannon J.; Harshman, John; Huddleston, Christopher J.; Marks, Ben D.; Miglia, Kathleen J.; Moore, William S.; Reddy, Sushma; Sheldon, Frederick H.; Witt, Christopher C.; Yuri, Tamaki (2011)
    Background: Microinversions are cytologically undetectable inversions of DNA sequences that accumulate slowly in genomes. Like many other rare genomic changes (RGCs), microinversions are thought to be virtually homoplasy-free ...
  • A Phylogenomic Study of Birds Reveals Their Evolutionary History 
    Hackett, Shannon J.; Kimball, Rebecca T.; Reddy, Sushma; Bowie, Rauri C. K.; Braun, Edward L.; Braun, Michael J.; Chojnowski, Jena L.; Cox, W. Andrew; Han, Kin-Lan; Harshman, John; Huddleston, Christopher J.; Marks, Ben D.; Miglia, Kathleen J.; Moore, William S.; Sheldon, Frederick H.; Steadman, David W.; Witt, Christopher C.; Yuri, Tamaki (2008)
    Deep avian evolutionary relationships have been difficult to resolve as a result of a putative explosive radiation. Our study examined [~]32 kilobases of aligned nuclear DNA sequences from 19 independent loci for 169 ...
  • A Phylogenomic Supertree of Birds 
    Kimball, Rebecca T.; Oliveros, Carl H.; Wang, Ning; White, Noor D.; Barker, F. Keith; Field, Daniel J.; Ksepka, Daniel T.; Chesser, R. Terry; Moyle, Robert G.; Braun, Michael J.; Brumfield, Robb T.; Faircloth, Brant C.; Smith, Brian Tilston; Braun, Edward L. (2019)
    It has long been appreciated that analyses of genomic data (e.g., whole genome sequencing or sequence capture) have the potential to reveal the tree of life, but it remains challenging to move from sequence data to a clear ...
  • A well-tested set of primers to amplify regions spread across the avian genome 
    Kimball, Rebecca T.; Braun, Edward L.; Barker, F. Keith; Bowie, Rauri C. K.; Braun, Michael J.; Chojnowski, Jena L.; Hackett, Shannon J.; Han, Kin-Lan; Harshman, John; Heimer-Torres, Victoria; Holznagel, Wallace; Huddleston, Christopher J.; Marks, Ben D.; Miglia, Kathleen J.; Moore, William S.; Reddy, Sushma; Sheldon, Frederick H.; Smith, Jordan V.; Witt, Christopher C.; Yuri, Tamaki (2009)
  • What are the roles of taxon sampling and model fit in tests of cyto-nuclear discordance using avian mitogenomic data? 
    Tamashiro, Ryan A.; White, Noor D.; Braun, Michael J.; Faircloth, Brant C.; Braun, Edward L.; Kimball, Rebecca T. (2019)
    Conflicts between nuclear and mitochondrial phylogenies have led to uncertainty for some relationships within the tree of life. These conflicts have led some to question the value of mitochondrial DNA in phylogenetics now ...
  • Why do phylogenomic data sets yield conflicting trees? Data type influences the avian tree of life more than taxon sampling 
    Reddy, Sushma; Kimball, Rebecca T.; Pandey, Akanksha; Hosner, Peter A.; Braun, Michael J.; Hackett, Shannon J.; Han, Kin-Lan; Harshman, John; Huddleston, Christopher J.; Kingston, Sarah; Marks, Ben D.; Miglia, Kathleen J.; Moore, William S.; Sheldon, Frederick H.; Witt, Christopher C.; Yuri, Tamaki; Braun, Edward L. (2017)
    Phylogenomics, the use of large-scale data matrices in phylogenetic analyses, has been viewed as the ultimate solution to the problem of resolving difficult nodes in the tree of life. However, it has become clear that ...

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