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Browsing Department of Vertebrate Zoology by Author "Hackett, Shannon J."

Browsing Department of Vertebrate Zoology by Author "Hackett, Shannon J."

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  • Are Transposable Element Insertions Homoplasy Free?: An Examination Using the Avian Tree of Life 
    Han, Kin-Lan; Braun, Edward L.; Kimball, Rebecca T.; Reddy, Sushma; Bowie, Rauri C. K.; Braun, Michael J.; Chojnowski, Jena L.; Hackett, Shannon J.; Harshman, John; Huddleston, Christopher J.; Marks, Ben D.; Miglia, Kathleen J.; Moore, William S.; Sheldon, Frederick H.; Steadman, David W.; Witt, Christopher C.; Yuri, Tamaki (2011)
  • Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats 
    Song, Se Jin; Sanders, Jon G.; Delsuc, Frédéric; Metcalf, Jessica; Amato, Katherine; Taylor, Michael W.; Mazel, Florent; Lutz, Holly L.; Winker, Kevin; Graves, Gary R.; Humphrey, Gregory; Gilbert, Jack A.; Hackett, Shannon J.; White, Kevin P.; Skeen, Heather R.; Kurtis, Sarah M.; Withrow, Jack; Braile, Thomas; Miller, Matthew; McCracken, Kevin G.; Maley, James M.; Ezenwa, Vanessa O.; Williams, Allison; Blanton, Jessica M.; McKenzie, Valerie J.; Knight, Rob (2020)
    Diet and host phylogeny drive the taxonomic and functional contents of the gut microbiome in mammals, yet it is unknown whether these patterns hold across all vertebrate lineages. Here, we assessed gut microbiomes from ...
  • Homoplastic microinversions and the avian tree of life 
    Braun, Edward L.; Kimball, Rebecca T.; Han, Kin-Lan; Iuhasz-Velez, Naomi R.; Bonilla, Amber J.; Chojnowski, Jena L.; Smith, Jordan V.; Bowie, Rauri C. K.; Braun, Michael J.; Hackett, Shannon J.; Harshman, John; Huddleston, Christopher J.; Marks, Ben D.; Miglia, Kathleen J.; Moore, William S.; Reddy, Sushma; Sheldon, Frederick H.; Witt, Christopher C.; Yuri, Tamaki (2011)
    Background: Microinversions are cytologically undetectable inversions of DNA sequences that accumulate slowly in genomes. Like many other rare genomic changes (RGCs), microinversions are thought to be virtually homoplasy-free ...
  • A Phylogenomic Study of Birds Reveals Their Evolutionary History 
    Hackett, Shannon J.; Kimball, Rebecca T.; Reddy, Sushma; Bowie, Rauri C. K.; Braun, Edward L.; Braun, Michael J.; Chojnowski, Jena L.; Cox, W. Andrew; Han, Kin-Lan; Harshman, John; Huddleston, Christopher J.; Marks, Ben D.; Miglia, Kathleen J.; Moore, William S.; Sheldon, Frederick H.; Steadman, David W.; Witt, Christopher C.; Yuri, Tamaki (2008)
    Deep avian evolutionary relationships have been difficult to resolve as a result of a putative explosive radiation. Our study examined [~]32 kilobases of aligned nuclear DNA sequences from 19 independent loci for 169 ...
  • A well-tested set of primers to amplify regions spread across the avian genome 
    Kimball, Rebecca T.; Braun, Edward L.; Barker, F. Keith; Bowie, Rauri C. K.; Braun, Michael J.; Chojnowski, Jena L.; Hackett, Shannon J.; Han, Kin-Lan; Harshman, John; Heimer-Torres, Victoria; Holznagel, Wallace; Huddleston, Christopher J.; Marks, Ben D.; Miglia, Kathleen J.; Moore, William S.; Reddy, Sushma; Sheldon, Frederick H.; Smith, Jordan V.; Witt, Christopher C.; Yuri, Tamaki (2009)
  • Why do phylogenomic data sets yield conflicting trees? Data type influences the avian tree of life more than taxon sampling 
    Reddy, Sushma; Kimball, Rebecca T.; Pandey, Akanksha; Hosner, Peter A.; Braun, Michael J.; Hackett, Shannon J.; Han, Kin-Lan; Harshman, John; Huddleston, Christopher J.; Kingston, Sarah; Marks, Ben D.; Miglia, Kathleen J.; Moore, William S.; Sheldon, Frederick H.; Witt, Christopher C.; Yuri, Tamaki; Braun, Edward L. (2017)
    Phylogenomics, the use of large-scale data matrices in phylogenetic analyses, has been viewed as the ultimate solution to the problem of resolving difficult nodes in the tree of life. However, it has become clear that ...

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