Research Datasets: Recent submissions

  • Dataset: Topography of nearside mare graben: Implications for dike-induced or passive extension formation 
    Martin, Emily S.; Watters, Thomas R. (The Smithsonian Institution, 2020)
    The following data correspond to a publication submitted by E. S. Martin and T. R. Watters to Icarus. These data correlate to topographic profiles of Rima Hippalus (Fig. 4), measurement locations (Fig. 5), select topographic ...
  • (16s) No 1. DADA2 Workflow (16S rRNA) Output 
    Scott, Jarrod (The Smithsonian Institution, 2020)
    Output files from the No 1. DADA2 Workflow page of the Bocas Hypoxia study. File names and descriptions:<B>RUN01_read_changes.txt</B>: Tracking changes in read counts (per sample) from the beginning to end of the DADA2 ...
  • (16s) No 2. Data Preparation (16S rRNA) Output 
    Scott, Jarrod (The Smithsonian Institution, 2020)
    Output files from the No 2. Data Preparation Workflow page of the Bocas Hypoxia study.File names and descriptions:<B>*seq_table.txt, *_tax_table.txt, *_asv.fasta: </B>Sequence tables, taxonomy tables, and ASV fasta files ...
  • (mg) No 5. Binning MAGs (metagenomes) Output 
    Scott, Jarrod (The Smithsonian Institution, 2020)
    Binning summary data for four collections: 1) <B>CONCOCT_5</B>, the automatic binning, 2) <B>VIRAL_FINAL</B>, the bins after manual refinement deemed to be viral, 3) <B>MICROBIAL_FINAL</B>, the bins after manual refinement ...
  • (mg) No 4. Assembly &amp; Annotation Summary (metagenomes) output 
    Scott, Jarrod (The Smithsonian Institution, 2020)
    Krona plots for Kraken short-read taxonomy and Kaiju contig taxonomy. File names and descriptions as follows:<B>cc-kraken.html</B>: Short-read Kraken Krona plots for site Coral Caye (cc).<B>cr-kraken.html</B>: Short-read ...
  • Orthomosaic of drone image in 12 locations in Myanmar 
    Biswas, Sumalika; Huang, Qiongyu; Leimgruber, Peter (The Smithsonian Institution, 2020)
    Orthomosaic of drone image collected in 12 locations in Myanmar in 2018 and 2019
  • Dataset For Pyenson Et Al. 2015 Peerj 
    Pyenson, Nicholas D.; Velez-Juarbe, Jorge; Gutstein, Carolina S.; Little, Holly; Vigil, Dioselina; O'Dea, Aaron (Zenodo, 2015)
    Supplemental datasets for the publication: Pyenson et al. (2015), <I>Isthminia panamensis</I>, a new fossil inioid (Mammalia, Cetacea) from the Chagres Formation of Panama and the evolution of 'river dolphins' in the ...
  • Lophiomys imhausi (crested rat) behavior in captive and natural environments 
    Weinstein, Sara; Malanga, Katrina Nyawira; M. Denise Dearing; Agwanda, Bernard; Maldonado, Jesús E. (The Smithsonian Institution, 2020)
    The crested rat, <I>Lophiomys imhausi</I>, is the only mammal known to sequester plant toxins. Found in eastern Africa, this large muroid rodent defends against predation by coating specialized hairs along its sides with ...
  • Dataset For Boersma And Pyenson 2015 Plosone 
    Boersma, Alexandra T.; Pyenson, Nicholas D. (Zenodo, 2015)
    This .zip file contains 3D datasets for the type specimen of <I>Ontocetus emmonsi</I>, a fossil pinniped, cataloged as USNM 329064 and the type specimen of <I>Albicetus oxymycterus</I>, a fossil sperm whale, cataloged as ...
  • (mg) No 3. Assembly &amp; Annotations (metagenomes) Output 
    Scott, Jarrod (The Smithsonian Institution, 2020)
    The complete output of the Snakemake workflow describe in the reference linked below. Zipped directories contain the outputs of each step from the workflow. Please note that some information contained in the contigs.db and ...
  • (16s) No 4. Differentially Abundant ASVs (16s rRNA) Output 
    Scott, Jarrod (The Smithsonian Institution, 2020)
    Output files from the No 4. Differentially Abundant ASVs page of the Bocas Hypoxia study.File names and descriptions:<B>da_asvs_pipeline.rdata</B>: contains all variables and objects from the pipeline. To see the Objects, ...
  • From e-voucher to genomic data: extracting sequencing data and preserving archive insect specimen access using medically important mosquitoes (Diptera: Culicidae) and kissing bugs (Hemiptera: Reduviidae) 
    Justi, Silvia A.; Linton, Yvonne-Marie (The Smithsonian Institution, 2020)
    Single copy orthologs and blast results for the aa and nt sequences identified using orthograph.
  • (16s) No 3. Diversity (16s rRNA) Output 
    Scott, Jarrod (The Smithsonian Institution, 2020)
    Output files from the No 3. Diversity Workflow page of the Bocas Hypoxia study.File names and descriptions:<B>16s-water.rdata: </B>contains all variables and phyloseq objects from the pipeline. To see the <B>Objects</B>, ...
  • Bay of Panama Water Quality Monitoring Project_pH, all stations 
    Paton, Steven (The Smithsonian Institution, 2019)
    Bay of Panama water quality monitoring program. Initiated July 2017pH data for all stationsDepth profiles at 7 locations. Approximately 5m depth intervalsSampling Sites 1 8° 38.743&#39;N 79° 2.887&#39;W 2 8° 42.498&#39;N ...
  • Bay of Panama Water Quality Monitoring Project_Turbidity, all stations 
    Paton, Steven (The Smithsonian Institution, 2019)
    Bay of Panama water quality monitoring program. Initiated July 2017Turbidity data for all stationsDepth profiles at 7 locations. Approximately 5m depth intervalsSampling Sites 1 8° 38.743&#39;N 79° 2.887&#39;W 2 8° ...
  • Bay of Panama Water Quality Monitoring Project_Dissolved Oxygen, all stations 
    Paton, Steven (The Smithsonian Institution, 2019)
    Bay of Panama water quality monitoring program. Initiated July 2017Dissolved Oxygen for all stationsDepth profiles at 7 locations. Approximately 5m depth intervalsSampling Sites 1 8° 38.743&#39;N 79° 2.887&#39;W 2 8° ...
  • Supporting data for &#39;Assessing the accuracy of paleodischarge estimates for rivers on Mars&#39; 
    Morgan, Alexander M. (The Smithsonian Institution, 2019)
    Supporting information for &#39;Assessing the accuracy of paleodischarge estimates for rivers on Mars&#39;, by A.M. Morgan and R.A. Craddock (2019) in Geophysical Research Letters
  • Bay of Panama Water Quality Monitoring Project_Chlorophyll, all stations 
    Paton, Steven (The Smithsonian Institution, 2019)
    Bay of Panama water quality monitoring program. Initiated July 2017Chlorophyll &amp; Blue-green algae measurements for all stationsDepth profiles at 7 locations. Approximately 5m depth intervalsSampling Sites 1 8° 38.743&#39;N ...
  • Bay of Panama Water Quality Monitoring Project, Site 7 of 7 
    Paton, Steven (The Smithsonian Institution, 2019)
    Bay of Panama water quality monitoring program. Site #7 (of 7). Location: 8° 51.308&#39;N, 79° 28.162&#39;WWeekly depth profile (approximately 5m intervals) using YSI EXO 2 sonde. Parameters measured temperature, salinity, ...
  • Checklist of the Vascular Plants of the Washington-Baltimore Area 
    Orli, Sylvia; Shetler, Stanwyn (The Smithsonian Institution, 2019)
    This Checklist of the Vascular Plants of the Washington-Baltimore Area was completed in 2002. It is a synthesis of names from older checklists, references and herbaria specimens.

Search DSpace


Browse

My Account