Research Datasets: Recent submissions

  • Myanmar Forest Change Product 1979-2019 
    Feng, Ming; Sexton, Joseph O.; Wang, Panshi; Huang, Qiongyu; Biswas, Sumalika; Leimgruber, Peter (The Smithsonian Institution, 2021)
    Myanmar Forest Change dataset is produced by TerraPulse and Smithsonian Conservation Biology Institute. The dataset is based on Landsat satellite image archive between 1979 and 2019. The dataset provides separate layers ...
  • Mariana Crow (Corvus kubaryi) genome assembly and annotation 
    Cortes-Rodriguez, Maria Nandadevi; Campana, Michael G.; Berry, Lainie; Faegre, Sarah; Derrickson, Scott R.; Ha, Renee Robinette; Dikow, Rebecca B.; Rutz, Christian; Fleischer, Robert C. (The Smithsonian Institution, 2021)
    This dataset includes the de novo genome assembly and annotation for the Mariana Crow/Åga (<I>Corvus kubaryi</I>) described in Cortes-Rodriguez et al. 2019. Population Genomics and Structure of the Critically Endangered ...
  • Hg-MATE-Db.v1.01142021 
    Gionfriddo, Caitlin M.; Capo, Eric; Peterson, Benjamin; Heyu Lin; Jones, Daniel; Bravo, Andrea G.; Bertilsson, Stefan; Moreau, John; McMahon, Katherine; Elias, Dwayne; Gilmour, Cynthia C. (The Smithsonian Institution, 2021)
    <B>Hg-MATE-Db: Hg-</B>cycling<B> M</B>icroorganisms<B> </B>in<B> A</B>quatic<B> </B>and<B> T</B>errestrial<B> E</B>cosystems<B> D</B>ata<B>b</B>ase <br/>Microorganisms play a significant role in regulating the form and ...
  • Blast2GO GFF file for workflow 1 (AUGUSTUS), both datasets 
    Venkatraman, Madhvi X. (The Smithsonian Institution, 2021)
    GFF files for dataset 1 (single sample RNA-seq) and dataset 2 (47 sample RNA-seq) using standalone AUGUSTUS pipeline (workflow 1)
  • Fungi Panama 2020 
    Valdes, Eugenio (The Smithsonian Institution, 2021)
    taxonID (Index Fungorum Registration Identifier) scientificName taxonomicStatus acceptedTaxonID acceptedScientificName synonymTaxonID synonymScientificName kingdom division class order family cf./aff. genus specificEpithet ...
  • Elevation and Vegetation Data for the Global Change Research Wetland, Summer 2016 
    Holmquist, James R.; Riera, Jefferson; Schile-Beers, Lisa; Megonigal, J. Patrick (The Smithsonian Institution, 2021)
    The Global Change Research Wetland (GCReW) is one of the most intensively studied tidal wetlands systems in the world, with the majority of the previous research spent on two native functional groups of plants (C<SUB>3</SUB> ...
  • 1999 CO2xCommunity Deep Root Biomass 
    Megonigal, J. Patrick; Holmquist, James R. (The Smithsonian Institution, 2021)
    Belowground biomass for 20 of the 45 experiment plots in the &quot;CO<SUB>2</SUB>xCommunity&quot; experiment taken in August 1999. Samples were taken after 13 years of continuous CO<SUB>2</SUB> treatment. Two soil cores ...
  • Supplementary material for Paleoclimatic and paleoecological reconstruction of a middle to late Eocene South American tropical dry forest 
    Jaramillo, Carlos A. (The Smithsonian Institution, 2021)
    The folder contains the following supplementary information:<br/>- Appendix 1: Photographs and descriptions of the microfossils morphotypes<br/>- SupplFile2: Palynological counts<br/>- SupplFile3: D13C isotopic data<br/>- ...
  • Blast2GO GFF file for workflow 2 (BRAKER2), both datasets 
    Venkatraman, Madhvi X. (The Smithsonian Institution, 2021)
    GFF files for dataset 1 (single sample RNA-seq) and dataset 2 (47 sample RNA-seq) using standalone BRAKER2 pipeline (workflow 2)
  • Transcriptome assembly and R code for &quot;Transcriptome assembly and differential gene expression of the invasive avian malaria parasite Plasmodium relictum in Hawai?i&quot; 
    Videvall, Elin; Paxton, Kristina L.; Campana, Michael G.; Cassin-Sackett, Loren; Atkinson, Carter T.; Fleischer, Robert C. (The Smithsonian Institution, 2021)
    This repository includes the <I>Plasmodium relictum </I>GRW4 transcriptome assembly (file Plasmodium_relictum_GRW4_transcriptome_v2.fasta) and the R code (file GRW4_transcriptome_gene_expression_Videvall.R) to reproduce ...
  • Global Change Research Wetland Vegetation Composition 1972 and 2010 
    Lu, Meng; Williams, Meghan N. (The Smithsonian Institution, 2021)
    This dataset consists of geospatial files representing vegetation zones for Kirkpatrick Marsh and the Global Change Research Wetland, a tidal brackish marsh on the Rhode River in Maryland. Shapefiles represent two moments ...
  • Palynology of the Miocene Solimões Formation, western Amazonia-Brazil: borehole 1-AS-15-AM 
    Jaramillo, Carlos A.; Gomes, Bianca Tacoronte (The Smithsonian Institution, 2021)
    The dataset contains two files, a Readme file with the R code to transform the list into a matrix and Supplementary Table 1 that contains the list of counts of all palynomorphs found in core 1-AS-15-AM
  • Mercury&#39;s crustal thickness and contractional strain 
    Watters, Thomas R. (The Smithsonian Institution, 2021)
    Data for crustal thickness and dynamic pressure maps and spreadsheets for histograms.
  • Data from: Nasal compartmentalization in Kogiidae (Cetacea, Physeteroidea): Insights from a new late Miocene dwarf sperm whale from the Pisco Formation 
    Benites-Palomino, Aldo; Velez-Juarbe, Jorge; Collareta, Alberto; Ochoa, Diana; Altamirano, Ali; Carré, Matthieu; Laime, Manuel J.; Urbina, Mario; Salas-Gismondi, Rodolfo (Dryad, 2020)
    Facial compartmentalization in the skull of extant pygmy whales (Kogiidae) is a unique feature among cetaceans that allows the housing of a wide array of organs responsible for echolocation. Recent fossil findings depict ...
  • Asteroid COI data 
    Collin, Rachel; Venera-Pontón, Dagoberto E. (The Smithsonian Institution, 2020)
    This is the fasta file of the COI sequences used to generate Figure 1 and used the the 2020 Invertebrate Biology paper: <B>How I wonder what you are: Can DNA barcoding identify the larval asteroids of Panama?</B>
  • Dataset: 2015-2018 USA-MDA TMON Marsh Biomass Surveys 
    Whigham, Dennis F.; Holmquist, James R.; Ogburn, Matthew B.; Goodison, Michael R.; McFarland, Eliza K.; Megonigal, J. Patrick (The Smithsonian Institution, 2020)
    Biomass surveys conducted each fall from 2015 to 2018 at the Global Change Research Wetland (GCREW) marsh, Corn Island, Bear Neck Creek, and other tidal wetland sites located at the Smithsonian Environmental Research Center ...
  • Archive of Multi-Band SHARAD Radargrams 
    Campbell, Bruce A. (The Smithsonian Institution, 2021)
    Radargrams in 32-bit floating point format of SHARAD data processed in two frequency sub-bands (&quot;High frequency&quot; is associated with file designator FHF and and &quot;Low frequency&quot; with FLF). All images are ...
  • End-Cretaceous Supplementary 
    Jaramillo, Carlos A. (figshare, 2020)
    Includes-Supplementary Materials.docx-Supplementary Data Folder that includesData S1 pollen countsData S2 fossil leaf datasetData S3 Isotopic DataData S4 Guaduas Leaf FloraData S5 Bogota Leaf FloraData S6 Leaf Damage ...
  • Dataset: Plant species determine tidal wetland methane response to sea level rise 
    Mueller, Peter; Mozdzer, Thomas J.; Aoki, Lillian R.; Noyce, Genevieve L.; Megonigal, J. Patrick; Langley, J. Adam (The Smithsonian Institution, 2020)
    This dataset accompanies the published paper Mueller et al. (2020) in the journal Nature Communications. We determined methane emissions from field-based mesocosms exposed to different global-change treatments (i.e. sea-level ...
  • Asteroid 16S alignment 
    Collin, Rachel; Venera-Pontón, Dagoberto E. (The Smithsonian Institution, 2020)
    These are the 16S data used for ABGD analysis mentioned in the methods of the 2020 paper in Invertebrate Biology: <B>How I wonder what you are: Can DNA barcoding identify the larval asteroids of Panama?</B>

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