Research Datasets: Recent submissions

  • DIAMOND Blast Data 
    Hawkins, Melissa T. R. (National Museum of Natural History, 2022)
    Data from DIAMOND Blast results for all samples to determine relative abundance of endogenous versus exogenous DNA content from extractions. README file is included. In some instances the extraction kit used is specified ...
  • AS-Raw-Data-Indicator-bacteria-project.csv 
    Chavarria, Karina A. (Smithsonian Tropical Research Institute, 2022)
    Raw data of water quality and indicator bacteria of 21 oligothropic tropical streams in the Panama Canal Watershed between 2018-2019
  • MarineGEO Seagrass Habitat Monitoring Protocol 
    Lefcheck, Jonathan S.; Tennenbaum Marine Observatories Network; MarineGEO (Smithsonian Environmental Research Center, 2022)
    In this document, we provide MarineGEO's standard survey design for sampling seagrass habitats, including key measurements of the plants, associated fauna, and other properties of the ecosystem. Additionally, we provide ...
  • Smithsonian Annual Reports JPGs 
    Dikow, Rebecca B. (Office of the Chief Information Officer, 2022)
    JPG files for Smithsonian Annual Report documents. These were downloaded from https://library.si.edu/digital-library/collection/smithsonian-legacy-publications and used for natural language processing applications.
  • Displacement-Length Scaling Relations of Nearside Graben: Evidence of Restricted Normal Faults on the Moon 
    Martin, Emily S.; Watters, Thomas R. (National Air and Space Museum, 2022)
    The following data correspond to a publication submitted by E. S. Martin and T. R. Watters to Icarus. Data includes all geospatial informaiton of displacement and length measurements for fifty lunar graben in multiple ...
  • Smithsonian Annual Reports Text files v2 
    Dikow, Rebecca B.; Trizna, Michael (Office of the Chief Information Officer, 2022)
    txt files resulting from OCR using Tesseract for Smithsonian Annual Report documents. The JPGs that were used as input data were downloaded from https://library.si.edu/digital-library/collection/smithsonian-legacy-publications. ...
  • Dataset: Marine species introduction via reproduction and its response to ship transit routes 
    Donelan, Sarah; Miller, A. Whitman; Muirhead, Jim R.; Ruiz, Gregory M. (Smithsonian Environmental Research Center, 2022)
    Data and code used to generate Figure 2 (main text) and WebFigure 1 describing how environmental conditions vary along major oceanic shipping routes and the propensity for this variability to affect spawning in marine hull ...
  • Science-Ashton-et-al-2022 
    Ashton, Gail V. (Smithsonian Environmental Research Center, 2022)
    Github repository containing data and code for analysis as published in Ashton et al. 2022 Predator control of marine communities increases with temperature across 115 degrees of latitude.
  • BCI Evaporation method comparison 
    Paton, Steve (Smithsonian Tropical Research Institute, 2022)
    In order to evaluate the evaporation estimates using Bellini plate atmometer, a comparison study was carried out from 1997 to 2001, we operated a side-by-side set of continuous measurements, in the lab clearing, comparing ...
  • IQ-TREE 
    Hawkins, Melissa T. R. (National Museum of Natural History, 2022)
    IQ-TREE files for both non partitioned (file ending with *NoPart) and SWSC entropy partitioned files (file ending SWSC).
  • Annual dendrometer data from the Barro Colorado Island 50-ha forest dynamics plot for 2015-2020 
    Ramos, Pablo; Villareal, Paulino; Condit, Richard S.; Cushman, Katherine; Muller-Landau, Helene C. (Smithsonian Tropical Research Institute, 2022)
    Please cite these data as Ramos, Pablo, Paulino Villareal, Richard Condit, KC Cushman, and Helene C. Muller-Landau. 2022. Annual dendrometer data from the Barro Colorado Island 50-ha forest dynamics plot for 2015-2020. ...
  • Microbial diversity decline and community response are decoupled from increased respiration in warmed tropical forest soil 
    Scott, Jarrod (2022)
    This collection contains data and data products for the SWELTR High-Temperature experiment. Here you will find 16S rRNA and ITS sequence data as well as many other data products from the study. The number of each dataset ...
  • Data: Attachment mechanism of epiphytic Anthurium obtusum 
    Zotz, Gerhard; Einzmann, Helena J. R.; Tay, Jessica Ying Ling (Smithsonian Tropical Research Institute, 2022)
    Datasets for anchorage strength analysis Peeling_Test.txt -> Consolidated dataset for peeling test Shear_Test.txt -> Consolidated dataset for shear test
  • Mitogenomes 
    Hawkins, Melissa T. R. (National Museum of Natural History, 2022)
    Alignment of mitogenomes for all individuals where greater than 5X average coverage was recovered. Note: Some GenBank sequences are included in this alignment. Also includes the newick tree and Geneious tree for the MrBayes ...
  • 10KTrees- Primates 
    Hawkins, Melissa T. R. (National Museum of Natural History, 2022)
    This tree was downloaded from the 10kTrees website (https://10ktrees.nunn-lab.org/Primates/downloadTrees.php) and used for fossil calibration of the BEAST analysis
  • Bayesian Skyline Plot 
    Hawkins, Melissa T. R. (National Museum of Natural History, 2022)
    Extended Bayesian Sklyline Plot data
  • Parque Metropolitano Crane, 65m_Wind speed & Direction 
    Paton, Steve (Smithsonian Tropical Research Institute, 2022)
    In 2021 the original crane was dismantled and replaced with a new, 45m crane in Jan. 2022. The temperature and humidity were moved to the top of the crane. <br/> Parque Natural Metropolitano (PNM) crane station. <br/> Two ...
  • UCE Concatenated Alignments 
    Hawkins, Melissa T. R. (National Museum of Natural History, 2022)
    Alignments used for phylogenomic inference.50MI_UCEs.nex is the alignment consisting of 39,966 bp and 205 individuals of the &#39;most informative&#39; loci as determined by the phyluce &#39;get informative sites&#39; ...
  • UCE loci 
    Hawkins, Melissa T. R. (National Museum of Natural History, 2022)
    All recovered UCE loci (4583 individual loci) from across 208 newly sequenced sifakas (genus <I>Propithecus</I>). Each loci provided separately and in nexus format.
  • UPGMA 95% Individuals Tree 
    Hawkins, Melissa T. R. (National Museum of Natural History, 2022)
    A UPGMA tree in newick format for the 95% complete dataset (512 UCE loci for 193 individuals).

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