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Browsing Research Datasets by Author "Campana, Michael G."
Now showing items 1-8 of 8
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Prado, Natalia; Armstrong, Ellie E.; Brown, Janine L.; Goldenberg, Shifra; Leimgruber, Peter; Pearson, Virginia R.; Maldonado, Jesús E.; Campana, Michael G. (Smithsonian National Zoo and Conservation Biology Institute, 2023)Genome sequence (Em538.fa.gz) and AUGUSTUS v. 3.3.2 gene predictions (Em538.gff) for the Em538 ("Kandula") 10x+Hi-C assembly (NCBI Accession: JAOTIA020000000). Also provided are the InterProScan v. 5.60-92.0 functional ...
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Campana, Michael G.; Corvelo, André; Shelton, Jennifer; Callicrate, Taylor E.; Bunting, Karen L.; Riley-Gillis, Bridget; Wos, Frank; DeGrazia, Justin; Jarvis, Erich D.; Fleischer, Robert C. (Smithsonian National Zoo and Conservation Biology Institute, 2023)This repository provides the annotations and genome assemblies generated in Campana et al. (2020). The de novo ‘akiapola‘au assembly is provided in file Aki.fa.gz, with its gene predictions in Aki_augustus_all.gff.gz. The ...
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Dataset for "High-resolution canid identification from scats using SNP capture: the FAECES* method" Parker, Lillian; Campana, Michael G. (Smithsonian National Zoo and Conservation Biology Institute, 2022)Two capture bait sets: one to enrich for ~20,000 SNP loci polymorphic in African wild dogs (<i>Lycaon pictus</i>) and one to enrich for ~800 SNPs polymorphic in desert kit fox (<i>Vulpes arsipus</i>) and coyotes (<i>Canis ...
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Parker, Lillian D.; Campana, Michael G. (The Smithsonian Institution, 2020)This dataset contains three files:1. MIGRATEN_InputFile_Phase1.dat. Description: Input file for MIGRATE-N. Contains phased pseudo-haplotype UCE alignments for 20 mountain treeshrews divided into four populations as follows: ...
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Cortes-Rodriguez, Maria Nandadevi; Campana, Michael G.; Berry, Lainie; Faegre, Sarah; Derrickson, Scott R.; Ha, Renee Robinette; Dikow, Rebecca B.; Rutz, Christian; Fleischer, Robert C. (The Smithsonian Institution, 2021)This dataset includes the de novo genome assembly and annotation for the Mariana Crow/Åga (<I>Corvus kubaryi</I>) described in Cortes-Rodriguez et al. 2019. Population Genomics and Structure of the Critically Endangered ...
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Paxton, Kristina L.; Cassin-Sackett, Loren; Atkinson, Carter T.; Videvall, Elin; Campana, Michael G.; Fleischer, Robert C. (Smithsonian National Zoo and Conservation Biology Institute, 2023)Supplemental tables and figures for "Gene expression reveals immune response strategies of naïve Hawaiian honeycreepers experimentally infected with introduced avian malaria"
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Campana, Michael G.; Armstrong, Ellie E. (National Zoo and Smithsonian Conservation Biology Institute, 2022)Test dataset for RatesTools. The wolf sequencing reads are subset from SRA accessions SRR1518530-SRR1518532 from BioProject PRJNA255370 (Fan et al. 2016) and SRR9095635-SRR9095636,SRR9095638 from BioProject PRJNA543877 ...
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Videvall, Elin; Paxton, Kristina L.; Campana, Michael G.; Cassin-Sackett, Loren; Atkinson, Carter T.; Fleischer, Robert C. (The Smithsonian Institution, 2021)This repository includes the <I>Plasmodium relictum </I>GRW4 transcriptome assembly (file Plasmodium_relictum_GRW4_transcriptome_v2.fasta) and the R code (file GRW4_transcriptome_gene_expression_Videvall.R) to reproduce ...
Now showing items 1-8 of 8
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