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Browsing Research Datasets by Title

Browsing Research Datasets by Title

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  • MarineGEO Coral Reef Habitat Monitoring Protocol 
    Harper, Leah M.; Tennenbaum Marine Observatories Network; MarineGEO (2021)
    In this document, we provide MarineGEO's standard survey design for sampling coral reef habitats, including key measurements of benthic cover, coral demographics, fish communities, and other properties of the ecosystem. ...
  • MarineGEO Fouling Community Monitoring Protocol 
    Janiak, Dean S.; Tennenbaum Marine Observatories Network; MarineGEO (2021)
    "MarineGEO Fouling Community Monitoring Protocol" provides a standard design for fouling community monitoring, including the following: measuring percent cover of fouling species during monthly intervals (30, 60, ...
  • MarineGEO Oyster Reef Habitat Monitoring Protocol 
    Janiak, Dean S.; Tennenbaum Marine Observatories Network; MarineGEO (2021)
    "MarineGEO Oyster Reef Habitat Monitoring Protocol" provides MarineGEO's standard survey design for sampling eastern oyster reef habitat including key measurements on reef attributes (reef area and height), reef ...
  • MarineGEO Predation Assay Protocol 
    Tennenbaum Marine Observatories Network; MarineGEO; Janiak, Dean S. (2021)
    "MarineGEO Predation Assay Protocol", or "squidpops", provides a simple, standard method to quantify the relative intensity of feeding by generalist predators that is comparable across a wide range of ...
  • MarineGEO Salt Marsh Habitat Monitoring Protocol 
    Olson, Jack; Whigham, Dennis F.; Megonigal, J. Patrick; Ogburn, Matthew B.; Tennenbaum Marine Observatories Network; MarineGEO (2021)
    "MarineGEO Salt Marsh Habitat Monitoring Protocol" provides an overview of MarineGEO's standardized methodology for estimating key ecological parameters in salt marshes including plant species composition, ...
  • MarineGEO Sampling Event's Environmental Monitoring Protocol 
    Harper, Leah M.; MarineGEO; Network, Tennenbaum Marine Observatories (2021)
    The "MarineGEO Sampling Event & Environmental Monitoring Protocol" collects critical sampling event metadata and environmental data to support MarineGEO surveys used to investigate "Habitats and foundation ...
  • MarineGEO Seagrass Habitat Monitoring Protocol 
    Lefcheck, Jonathan S.; Tennenbaum Marine Observatories Network; MarineGEO (Smithsonian Environmental Research Center, 2022)
    In this document, we provide MarineGEO's standard survey design for sampling seagrass habitats, including key measurements of the plants, associated fauna, and other properties of the ecosystem. Additionally, we provide ...
  • MarineGEO Sediment Organic Matter Protocol 
    Tennenbaum Marine Observatories Network; MarineGEO; Harper, Leah M. (2021)
    This protocol provides standardized data on sediment bulk density and organic matter content, which is obtained through loss-on-ignition using a combustion furnace. This protocol quantifies the organic matter content in ...
  • MarineGEO Ulva Assay Protocol 
    Harper, Leah M.; Tennenbaum Marine Observatories Network; MarineGEO (2021)
    The goal of this protocol is to implement a simple, standard method to quantify the relative intensity of feeding by generalist herbivores that is comparable across a wide range of sites and conditions. This assay quantities ...
  • MarineGEO Visual Census Protocol 
    Janiak, Dean S.; Tennenbaum Marine Observatories Network; MarineGEO (2021)
    Visual census provides a rapid, non-destructive way to quantify abundance of macroscopic organisms across a range of ecosystems where visibility is sufficient (coral reefs, subtidal rocky reefs, seagrass meadows). This ...
  • Mean Annual Fluxes of Carbon in Coastal Ecosystems of Eastern North America 
    Najjar, R. G.; Herrmann, M.; Alexander, R.; Boyer, E. W.; Burdige, D. J.; Butman, D.; Cai, W.; Canuel, Elizabeth A.; Chen, B.; Friedrichs, M.; Feagin, R. A.; Griffith, P.; Hinson, A.; Holmquist, James R.; Hu, X.; Kemp, W. M.; Kroeger, K.; Mannino, A.; Mccallister, S. L.; Mcgillis, W. R.; Mulholland, M.; Pilskaln, C.; Salisbury, J.; Signorini, S.; St-Laurent, P.; Tian, H.; Tzortziou, Maria A.; Vlahos, P.; Wang, Z.; Zimmerman, R. (2018)
    This dataset contains best estimates and uncertainties for mean annual fluxes of inorganic, organic, and total (organic + inorganic) carbon in tidal wetlands, estuaries and shelf waters of eastern North America, which is ...
  • Mercury's crustal thickness and contractional strain 
    Watters, Thomas R. (The Smithsonian Institution, 2021)
    Data for crustal thickness and dynamic pressure maps and spreadsheets for histograms.
  • Metadata for high resolution masked herbarium images 
    Dikow, Rebecca (The Smithsonian Institution, 2020)
    Metadata for images used to generate high-resolution masks. CatBarcode numbers correspond to image file names.
  • (mg) No 3. Assembly & Annotations (metagenomes) Output 
    Scott, Jarrod (The Smithsonian Institution, 2020)
    The complete output of the Snakemake workflow describe in the reference linked below. Zipped directories contain the outputs of each step from the workflow. Please note that some information contained in the contigs.db and ...
  • (mg) No 4. Assembly & Annotation Summary (metagenomes) output 
    Scott, Jarrod (The Smithsonian Institution, 2020)
    Krona plots for Kraken short-read taxonomy and Kaiju contig taxonomy. File names and descriptions as follows:<B>cc-kraken.html</B>: Short-read Kraken Krona plots for site Coral Caye (cc).<B>cr-kraken.html</B>: Short-read ...
  • (mg) No 5. Binning MAGs (metagenomes) Output 
    Scott, Jarrod (The Smithsonian Institution, 2020)
    Binning summary data for four collections: 1) <B>CONCOCT_5</B>, the automatic binning, 2) <B>VIRAL_FINAL</B>, the bins after manual refinement deemed to be viral, 3) <B>MICROBIAL_FINAL</B>, the bins after manual refinement ...
  • (mg) No 6. MAG02 Phylogenomic Analysis (metagenome) Output 
    Scott, Jarrod (The Smithsonian Institution, 2020)
    Files generated from the pangenomic (<B>01_MAG02_PAN</B>/), phylogenomic (<B>02_MAG02_PHYLOGENOMICS</B>), and 16S rRNA phylogenetic (<B>03_MAG02_16S_rRNA_PHYLOGENETICS</B>) analyses of MAG02. You can use the anvi&#39;o ...
  • (mg) No 6. MAG04 Phylogenomic Analysis (metagenome) Output 
    Scott, Jarrod J. (The Smithsonian Institution, 2021)
    Files generated from the pangenomic (<B>01_MAG04_PAN</B>/) and phylogenomic (<B>02_MAG04_PHYLOGENOMICS</B>) analyses of MAG04. You can use the anvi&#39;o commands described in the workflow to visualize the data.
  • MGS MOC Mars Daily Global Maps 
    Wang, Huiqun (2016)
    This dataset contains Mars Daily Global Maps (MDGMs) made from the wide-angle global map swath images taken by the Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC). The raw images are available at the Planetary Data ...
  • Microbial diversity decline and community response are decoupled from increased respiration in warmed tropical forest soil 
    Scott, Jarrod (2022)
    This collection contains data and data products for the SWELTR High-Temperature experiment. Here you will find 16S rRNA and ITS sequence data as well as many other data products from the study. The number of each dataset ...

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