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Browsing Research Datasets by Title

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  • Hellbender skin transcriptome BLAST nr annotations 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Hellbender skin transcriptome BLAST xml 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Hellbender skin transcriptome isoform counts matrix 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • Hellbender skin transcriptome metadata 
    Kaganer, Alyssa; Ossiboff, Robert J.; Keith, Nicole I.; Schuler, Krysten L.; Comizzoli, Pierre; Hare, Matthew P.; Fleischer, Robert C.; Gratwicke, Brian; Bunting, Elizabeth M. (Smithsonian National Zoo and Conservation Biology Institute, 2023)
    In this study, we explored the efficacy of Bd vaccination on hellbender salamanders and functionally characterized host, host-associated microbiome, and pathogen throughout immunization and infection. We compared the ...
  • A hemispheric dichotomy in the contraction of Mercury 
    Watters, Thomas R. (The Smithsonian Institution, 2020)
    Digitized segments of Mercury's lobate scarps and high-relief ridges.
  • Hg-MATE-Db.v1.01142021 
    Gionfriddo, Caitlin M.; Capo, Eric; Peterson, Benjamin; Heyu Lin; Jones, Daniel; Bravo, Andrea G.; Bertilsson, Stefan; Moreau, John; McMahon, Katherine; Elias, Dwayne; Gilmour, Cynthia C. (The Smithsonian Institution, 2021)
    <B>Hg-MATE-Db: Hg-</B>cycling<B> M</B>icroorganisms<B> </B>in<B> A</B>quatic<B> </B>and<B> T</B>errestrial<B> E</B>cosystems<B> D</B>ata<B>b</B>ase <br/>Microorganisms play a significant role in regulating the form and ...
  • High resolution ground truth masks 
    Dikow, Rebecca (The Smithsonian Institution, 2020)
    High resolution masks for ferns and fern allies
  • High resolution JPG images used for masking 
    Dikow, Rebecca (The Smithsonian Institution, 2020)
    High resolution JPG images or ferns and fern-allies used for masking.
  • (high-temp) Code for publication figures 
    Scott, Jarrod J. (Smithsonian Tropical Research Institute, 2022)
    Code to reproduce all Main, Extended Data, and Supplementary figures in the publication. The complete workflow can be accessed at https://sweltr.github.io/high-temp/pub.html
  • (high-temp) Data for publication figures 
    Scott, Jarrod J. (Smithsonian Tropical Research Institute, 2022)
    Data to reproduce all Main, Extended Data, and Supplementary figures in the publication. The complete workflow can be accessed at https://sweltr.github.io/high-temp/pub.html
  • Holocene Volcano List 
    Venzke, Edward A. (Smithsonian Institution National Museum of Natural History Global Volcanism Program, 2013)
    The Global Volcanism Program database currently contains 1426 volcanoes with eruptions during the Holocene period (approximately the last 10,000 years). Primary names are sorted below in alphabetical order. Please use the ...
  • Images used to train Amazonian fish classification model 
    Dikow, Rebecca B. (Smithsonian Office of the Chief Information Officer, 2023)
    Images used to train Amazonian fish classification model. Images are in directories labeled by genus. CSV file contains image name and genus ID.
  • Images used to train Amazonian fish masking model 
    Dikow, Rebecca B. (Smithsonian Office of the Chief Information Officer, 2023)
    Images used to train Amazonian fish masking model.
  • Incoherently Summed SHARAD Radargrams of the South Polar Layered Deposits, Mars 
    Whitten, Jennifer L.; Campbell, Bruce A. (Smithsonian Research Online, 2018)
    Full-resolution .tif files of the 86 incoherently summed radargrams analyzed in Whitten and Campbell (2018). Each radargram has been individually stretched to increase the contrast in each image and an ice depth correction ...
  • Increasing morphological disparity and decreasing optimality for jaw speed and strength during the radiation of jawed vertebrates 
    Deakin, William J.; Anderson, Philip S. L.; Den Boer, Wendy; Smith, Thomas J.; Hill, Jennifer J.; Rücklin, Martin; Donoghue, Philip C. J.; Rayfield, Emily J. (Dryad, 2021)
    The Siluro-Devonian adaptive radiation of jawed vertebrates, which underpins almost all living vertebrate biodiversity, is characterised by the evolutionary innovation of the lower jaw. Multiple lines of evidence have ...
  • Individual nuclear gene alignments for clouded leopard phylogenomic analyses 
    Dikow, Rebecca B. (Smithsonian Office of the Chief Information Officer, 2023)
    Individual nuclear gene alignments, both nucleotide and amino acids, for phylogenomic analyses. Genes isolated from complete genomes using BUSCO, alignments completed in MAFFT.
  • influences of climate and nutrient enrichment on herbivory and herbivore diversity in mangrove forests. 
    Feller, Ilka C.; Lovelock, Catherine E.; Ball, Marilyn C.; Ellis, Joanne I.; Reef, Ruth (Smithsonian Environmental Research Center, 2016)
  • Insects feeding on seeds and fruits at BCI, KHC and WAN 
    Basset, Yves (The Smithsonian Institution, 2019)
    Unlike mutualistic pollination and seed dispersal networks, antagonistic seed predation networks have not been well studied in the tropics. We tested whether the structure of antagonistic tripartite networks composed of ...
  • IQ-TREE 
    Hawkins, Melissa T. R. (National Museum of Natural History, 2022)
    IQ-TREE files for both non partitioned (file ending with *NoPart) and SWSC entropy partitioned files (file ending SWSC).
  • Japanese Tsunami Marine Debris Objects and Their Associated Taxa 
    Carlton, James T.; Chapman, John W.; Miller, Jessica A.; Carlton, Deborah A.; McCuller, Megan I.; Treneman, Nancy C.; Steves, Brian P.; Ruiz, Gregory M. (Dryad Digital Repository, 2017)
    The 2011 East Japan earthquake generated a massive tsunami that launched an extraordinary transoceanic biological rafting event with no known historical precedent. We document 289 living Japanese coastal marine species ...

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