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Browsing by Author "Knight, Rob"

Browsing by Author "Knight, Rob"

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  • Antifungal isolates database of amphibian skin-associated bacteria and function against emerging fungal pathogens 
    Woodhams, Douglas C.; Alford, Ross A.; Antwis, Rachael E.; Archer, Holly; Becker, Matthew H.; Belden, Lisa K.; Bell, Sara C.; Bletz, Molly; Daskin, Joshua H.; Davis, Leyla R.; Flechas, Sandra V.; Lauer, Antje; Gonzalez, Antonio; Harris, Reid N.; Holden, Whitney M.; Hughey, Myra C.; Ibáñez, Roberto D.; Knight, Rob; Kueneman, Jordan; Rabemananjara, Falitiana; Reinert, Laura K.; Rollins-Smith, Louise; Roman-Rodriguez, Franklin; Shaw, Stephanie D.; Walke, Jenifer B.; McKenzie, Valerie (2015)
    Microbial symbionts of vertebrate skin have an important function in defense of the host against pathogens. In particular, the emerging chytrid fungus Batrachochytrium dendrobatidis, causes widespread disease in amphibians ...
  • Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats 
    Song, Se Jin; Sanders, Jon G.; Delsuc, Frédéric; Metcalf, Jessica; Amato, Katherine; Taylor, Michael W.; Mazel, Florent; Lutz, Holly L.; Winker, Kevin; Graves, Gary R.; Humphrey, Gregory; Gilbert, Jack A.; Hackett, Shannon J.; White, Kevin P.; Skeen, Heather R.; Kurtis, Sarah M.; Withrow, Jack; Braile, Thomas; Miller, Matthew; McCracken, Kevin G.; Maley, James M.; Ezenwa, Vanessa O.; Williams, Allison; Blanton, Jessica M.; McKenzie, Valerie J.; Knight, Rob (2020)
    Diet and host phylogeny drive the taxonomic and functional contents of the gut microbiome in mammals, yet it is unknown whether these patterns hold across all vertebrate lineages. Here, we assessed gut microbiomes from ...
  • Early-life gut dysbiosis linked to juvenile mortality in ostriches 
    Videvall, Elin; Song, Se Jin; Bensch, Hanna M.; Strandh, Maria; Engelbrecht, Anel; Serfontein, Naomi; Hellgren, Olof; Olivier, Adriaan; Cloete, Schalk; Knight, Rob; Cornwallis, Charlie K. (2020)
    Abstract Background Imbalances in the gut microbial community (dysbiosis) of vertebrates have been associated with several gastrointestinal and autoimmune diseases. However, it is unclear which taxa are associated with gut ...
  • Engineering the microbiome for animal health and conservation 
    Jin Song, Se; Woodhams, Douglas C.; Martino, Cameron; Allaband, Celeste; Mu, Andre; Javorschi-Miller-Montgomery, Sandrine; Suchodolski, Jan S.; Knight, Rob (2019)
    IMPACT STATEMENT: Considering the clear effects of microbiota on important aspects of animal biology and development (including in humans), this topic is timely and broadly appealing, as it compels us to consider the ...
  • The founding charter of the Genomic Observatories Network 
    Davies, Neil; Field, Dawn; Amaral-Zettler, Linda; Clark, Melody S.; Deck, John; Drummond, Alexei; Faith, Daniel P.; Geller, Jonathan; Gilbert, Jack; Glöckner, Frank Oliver; Hirsch, Penny; Leong, Jo-Ann; Meyer, Christopher P.; Obst, Matthias; Planes, Serge; Scholin, Chris; Vogler, Alfried P.; Gates, Ruth D.; Toonen, Robert J.; Berteaux-Lecellier, V.; Barbier, Michèle; Barker, Katherine; Bertilsson, Stefan; Bicak, Mesude; Bietz, Matthew J.; Bobe, Jason; Bodrossy, Levente; Borja, Angel; Coddington, Jonathan A.; Fuhrman, Jed; Gerdts, Gunnar; Gillespie, Rosemary; Goodwin, Kelly; Hanson, Paul C.; Hero, Jean-Marc; Hoekman, David; Jansson, Janet; Jeanthon, Christian; Kao, Rebecca; Klindworth, Anna; Knight, Rob; Kottmann, Renzo; Koo, Michelle S.; Kotoulas, Georgios; Lowe, Andrew J.; Marteinsson, Viggó Thór; Meyer, Folker; Morrison, Norman; Myrold, David D.; Pafilis, Evangelos; Parker, Stephanie; Parnell, J. J.; Polymenakou, Paraskevi N.; Ratnasingham, Sujeevan; Roderick, George K.; Rodriguez-Ezpeleta, Naiara; Schonrogge, Karsten; Simon, Nathalie; Valette-Silver, Nathalie; Springer, Yuri; Stone, Graham N.; Stones-Havas, Steve; Sansone, Susanna-Assunta; Thibault, Kate M.; Wecker, Patricia; Wichels, Antje; Wooley, John C.; Yahara, Tetsukazu; Zingone, Adriana (2014)
  • Interacting Symbionts and Immunity in the Amphibian Skin Mucosome Predict Disease Risk and Probiotic Effectiveness 
    Woodhams, Douglas; Brandt, Hannelore; Baumgartner, Simone; Kielgast, Jos; Kupfer, Eliane; Tobler, Ursina; Davis, Leyla R.; Schmidt, Benedikt R.; Bel, Christian; Hodel, Sandro; Knight, Rob; Mckenzie, Valerie (2014)
  • Major shifts in gut microbiota during development and its relationship to growth in ostriches 
    Videvall, Elin; Song, Se Jin; Bensch, Hanna M.; Strandh, Maria; Engelbrecht, Anel; Serfontein, Naomi; Hellgren, Olof; Olivier, Adriaan; Cloete, Schalk; Knight, Rob; Cornwallis, Charlie K. (2019)
    The development of gut microbiota during ontogeny is emerging as an important process influencing physiology, immunity and fitness in vertebrates. However, knowledge of how bacteria colonize the juvenile gut, how this is ...
  • Predicting fungal infection rate and severity with skin-associated microbial communities on amphibians 
    Chen, Melissa Y.; Kueneman, Jordan G.; González, Antonio; Humphrey, Greg; Knight, Rob; McKenzie, Valerie J. (2022)
  • Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking 
    Wang, Mingxun; Carver, Jeremy J.; Phelan, Vanessa V.; Sanchez, Laura M.; Garg, Neha; Peng, Yao; Nguyen, Don Duy; Watrous, Jeramie; Kapono, Clifford A.; Luzzatto-Knaan, Tal; Porto, Carla; Bouslimani, Amina; Melnik, Alexey V.; Meehan, Michael J.; Liu, Wei-Ting; Crüsemann, Max; Boudreau, Paul D.; Esquenazi, Eduardo; Sandoval-Calderón, Mario; Kersten, Roland D.; Pace, Laura A.; Quinn, Robert A.; Duncan, Katherine R.; Hsu, Cheng-Chih; Floros, Dimitrios J.; Gavilan, Ronnie G.; Kleigrewe, Karin; Northen, Trent; Dutton, Rachel J.; Parrot, Delphine; Carlson, Erin E.; Aigle, Bertrand; Michelsen, Charlotte F.; Jelsbak, Lars; Sohlenkamp, Christian; Pevzner, Pavel; Edlund, Anna; McLean, Jeffrey; Piel, Jö; Murphy, Brian T.; Gerwick, Lena; Liaw, Chih-Chuang; Yang, Yu-Liang; Humpf, Hans-Ulrich; Maansson, Maria; Keyzers, Robert A.; Sims, Amy C.; Johnson, Andrew R.; Sidebottom, Ashley M.; Sedio, Brian E.; Klitgaard, Andreas; Larson, Charles B.; Cristopher, Boya P.,; Torres-Mendoza, Daniel; Gonzalez, David J.; Silva, Denise B.; Marques, Lucas M.; Demarque, Daniel P.; Pociute, Egle; O'Neill, Ellis C.; Briand, Enora; Helfrich, Eric J. N.; Granatosky, Eve A.; Glukhov, Evgenia; Ryffel, Florian; Houson, Hailey; Mohimani, Hosein; Kharbush, Jenan J.; Zeng, Yi; Vorholt, Julia A.; Kurita, Kenji L.; Charusanti, Pep; McPhail, Kerry L.; Nielsen, Kristian Fog; Vuong, Lisa; Elfeki, Maryam; Traxler, Matthew F.; Engene, Niclas; Koyama, Nobuhiro; Vining, Oliver B.; Baric, Ralph; Silva, Ricardo R.; Mascuch, Samantha J.; Tomasi, Sophie; Jenkins, Stefan; Macherla, Venkat; Hoffman, Thomas; Agarwal, Vinayak; Williams, Philip G.; Dai, Jingqui; Neupane, Ram; Gurr, Joshua; Rodríguez, Andrés M. C.; Lamsa, Anne; Zhang, Chen; Dorrestein, Kathleen; Duggan, Brendan M.; Almaliti, Jehad; Allard, Pierre-Marie; Phapale, Prasad; Nothias, Louis-Felix; Alexandrov, Theodore; Litaudon, Marc; Wolfender, Jean-Luc; Kyle, Jennifer E.; Metz, Thomas O.; Peryea, Tyler; Nguyen, Dac-Trung; VanLeer, Danielle; Shinn, Paul; Jadhav, Ajit; Müller, Rolf; Waters, Katrina M.; Shi, Wenyuan; Liu, Xueting; Zhang, Lixin; Knight, Rob; Jensen, Paul R.; Palsson, Bernhard Ø.; Pogliano, Kit; Linington, Roger G.; Gutiérrez, Marcelino; Lopes, Norberto P.; Gerwick, William H.; Moore, Bradley S.; Dorrestein, Pieter C.; Bandeira, Nuno (2016)
    The potential of the diverse chemistries present in natural products (NP) for biotechnology and medicine remains untapped because NP databases are not searchable with raw data and the NP community has no way to share data ...

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