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Browsing by Author "Coddington, Jonathan"

Browsing by Author "Coddington, Jonathan"

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  • Earth BioGenome Project: Sequencing life for the future of life 
    Lewin, Harris A.; Robinson, Gene E.; Kress, W. John; Baker, William J.; Coddington, Jonathan; Crandall, Keith A.; Durbin, Richard; Edwards, Scott V.; Forest, Felix; Gilbert, M. Thomas P.; Goldstein, Melissa M.; Grigoriev, Igor V.; Hackett, Kevin J.; Haussler, David; Jarvis, Erich D.; Johnson, Warren E.; Patrinos, Aristides; Richards, Stephen; Castilla-Rubio, Juan Carlos; van Sluys, Marie-Anne; Soltis, Pamela S.; Xu, Xun; Yang, Huanming; Zhang, Guojie (2018)
    Increasing our understanding of Earth's biodiversity and responsibly stewarding its resources are among the most crucial scientific and social challenges of the new millennium. These challenges require fundamental new ...
  • From Gondwana to GAARlandia: Evolutionary history and biogeography of ogre-faced spiders (Deinopis) 
    Chamberland, Lisa; McHugh, Anne; Kechejian, Sarah; Binford, Greta J.; Bond, Jason E.; Coddington, Jonathan; Dolman, Gaynor; Hamilton, Chris A.; Harvey, Mark S.; Kuntner, Matjaž; Agnarsson, Ingi (2018)
    Aim We explore the evolutionary history of the ogre-faced spiders (Deinopis) from their Early Cretaceous origins to present day. Specifically, we investigate how vicariance and dispersal have shaped distribution patterns ...
  • Greater than X kb: a quantitative assessment of preservation conditions on genomic DNA quality, and a proposed standard for genome-quality DNA 
    Mulcahy, Daniel G.; Macdonald, Kenneth S.; Brady, Seán G.; Meyer, Christopher; Barker, Katharine B.; Coddington, Jonathan (2016)
    Advances in biodiversity genomic sequencing will increasingly depend on the availability of DNA samples-and their quantifiable metadata-preserved in large institutional biorepositories that are discoverable to the scientific ...
  • Guidelines for collecting vouchers and tissues intended for genomic work (Smithsonian Institution): Botany Best Practices 
    Funk, Vicki Ann; Gostel, Morgan; Devine, Amanda; Kelloff, Carol L.; Wurdack, Kenneth J.; Tuccinardi, Chris; Radosavljevic, Aleks; Peters, Melinda; Coddington, Jonathan (2017)
  • The house spider genome reveals an ancient whole-genome duplication during arachnid evolution 
    Schwager, Evelyn E.; Sharma, Prashant P.; Clarke, Thomas; Leite, Daniel J.; Wierschin, Torsten; Pechmann, Matthias; Akiyama-Oda, Yasuko; Esposito, Lauren; Bechsgaard, Jesper; Bilde, Trine; Buffry, Alexandra D.; Chao, Hsu; Dinh, Huyen; Doddapaneni, HarshaVardhan; Dugan, Shannon; Eibner, Cornelius; Extavour, Cassandra G.; Funch, Peter; Garb, Jessica; Gonzalez, Luis B.; González, Vanessa L.; Griffiths-Jones, Sam; Han, Yi; Hayashi, Cheryl; Hilbrant, Maarten; Hughes, Daniel S. T.; Janssen, Ralf; Lee, Sandra L.; Maeso, Ignacio; Murali, Shwetha C.; Muzny, Donna M.; Nunes, da Fonseca; Paese, Christian L. B.; Qu, Jiaxin; Ronshaugen, Matthew; Schomburg, Christoph; Schönauer, Anna; Stollewerk, Angelika; Torres-Oliva, Montserrat; Turetzek, Natascha; Vanthournout, Bram; Werren, John H.; Wolff, Carsten; Worley, Kim C.; Bucher, Gregor; Gibbs, Richard A.; Coddington, Jonathan; Oda, Hiroki; Stanke, Mario; Ayoub, Nadia A.; Prpic, Nikola-Michael; Flot, Jean-François; Posnien, Nico; Richards, Stephen; McGregor, Alistair P. (2017)
    BACKGROUND: The duplication of genes can occur through various mechanisms and is thought to make a major contribution to the evolutionary diversification of organisms. There is increasing evidence for a large-scale duplication ...
  • Next-Generation museum genomics: phylogenetic relationships among palpimanoid spiders using sequence capture techniques (Araneae: Palpimanoidea) 
    Wood, Hannah M.; González, Vanessa L.; Lloyd, Michael; Coddington, Jonathan; Scharff, Nikolaj (2018)
    Historical museum specimens are invaluable for morphological and taxonomic research, but typically the DNA is degraded making traditional sequencing techniques difficult to impossible for many specimens. Recent advances ...
  • A workflow for expanding DNA barcode reference libraries through 'museum harvesting' of natural history collections 
    Levesque-Beaudin, Valerie; Miller, Meredith; Dikow, Torsten; Miller, Scott E.; Prosser, Sean; Zakharov, Evgeny; McKeown, Jaclyn; Sones, Jayme; Redmond, Niamh; Coddington, Jonathan; Santos, Bernardo; Bird, Jessica; deWaard, Jeremy (2023)
    Natural history collections are the physical repositories of our knowledge on species, the entities of biodiversity. Making this knowledge accessible to society – through, for example, digitisation or the construction of ...

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