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Browsing by Author "Petersen, Bent"

Browsing by Author "Petersen, Bent"

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  • Dense sampling of bird diversity increases power of comparative genomics 
    Feng, Shaohong; Stiller, Josefin; Deng, Yuan; Armstrong, Joel; Fang, Qi; Reeve, Andrew Hart; Xie, Duo; Chen, Guangji; Guo, Chunxue; Faircloth, Brant C.; Petersen, Bent; Wang, Zongji; Zhou, Qi; Diekhans, Mark; Chen, Wanjun; Andreu-Sánchez, Sergio; Margaryan, Ashot; Howard, Jason Travis; Parent, Carole; Pacheco, George; Sinding, Mikkel-Holger S.; Puetz, Lara; Cavill, Emily; Ribeiro, Ângela M.; Eckhart, Leopold; Fjeldså, Jon; Hosner, Peter A.; Brumfield, Robb T.; Christidis, Les; Bertelsen, Mads F.; Sicheritz-Ponten, Thomas; Tietze, Dieter Thomas; Robertson, Bruce C.; Song, Gang; Borgia, Gerald; Claramunt, Santiago; Lovette, Irby J.; Cowen, Saul J.; Njoroge, Peter; Dumbacher, John Philip; Ryder, Oliver A.; Fuchs, Jérôme; Bunce, Michael; Burt, David W.; Cracraft, Joel; Meng, Guanliang; Hackett, Shannon J.; Ryan, Peter G.; Jønsson, Knud Andreas; Jamieson, Ian G.; da Fonseca, Rute R.; Braun, Edward L.; Houde, Peter; Mirarab, Siavash; Suh, Alexander; Hansson, Bengt; Ponnikas, Suvi; Sigeman, Hanna; Stervander, Martin; Frandsen, Paul B.; van der Zwan, Henriette; van der Sluis, Rencia; Visser, Carina; Balakrishnan, Christopher N.; Clark, Andrew G.; Fitzpatrick, John W.; Bowman, Reed; Chen, Nancy; Cloutier, Alison; Sackton, Timothy B.; Edwards, Scott V.; Foote, Dustin J.; Shakya, Subir B.; Sheldon, Frederick H.; Vignal, Alain; Soares, André E. R.; Shapiro, Beth; González-Solís, Jacob; Ferrer-Obiol, Joan; Rozas, Julio; Riutort, Marta; Tigano, Anna; Friesen, Vicki; Dalén, Love; Urrutia, Araxi O.; Székely, Tamás; Liu, Yang; Campana, Michael G.; Corvelo, André; Fleischer, Robert C.; Rutherford, Kim M.; Gemmell, Neil J.; Dussex, Nicolas; Mouritsen, Henrik; Thiele, Nadine; Delmore, Kira; Liedvogel, Miriam; Franke, Andre; Hoeppner, Marc P.; Krone, Oliver; Fudickar, Adam M.; Milá, Borja; Ketterson, Ellen D.; Fidler, Andrew Eric; Friis, Guillermo; Parody-Merino, Ángela M.; Battley, Phil F.; Cox, Murray P.; Lima, Nicholas Costa Barroso; Prosdocimi, Francisco; Parchman, Thomas Lee; Schlinger, Barney A.; Loiselle, Bette A.; Blake, John G.; Lim, Haw Chuan; Day, Lainy B.; Fuxjager, Matthew J.; Baldwin, Maude W.; Braun, Michael J.; Wirthlin, Morgan; Dikow, Rebecca B.; Ryder, T. B.; Camenisch, Glauco; Keller, Lukas F.; DaCosta, Jeffrey M.; Hauber, Mark E.; Louder, Matthew I. M.; Witt, Christopher C.; McGuire, Jimmy A.; Mudge, Joann; Megna, Libby C.; Carling, Matthew D.; Wang, Biao; Taylor, Scott A.; Del-Rio, Glaucia; Aleixo, Alexandre; Vasconcelos, Ana Tereza Ribeiro; Mello, Claudio V.; Weir, Jason T.; Haussler, David; Li, Qiye; Yang, Huanming; Wang, Jian; Lei, Fumin; Rahbek, Carsten; Gilbert, M. T.; Graves, Gary R.; Jarvis, Erich D.; Paten, Benedict; Zhang, Guojie (2020)
    Whole-genome sequencing projects are increasingly populating the tree of life and characterizing biodiversity1–4. Sparse taxon sampling has previously been proposed to confound phylogenetic inference5, and captures only a ...
  • Interspecific Gene Flow Shaped the Evolution of the Genus Canis 
    Gopalakrishnan, Shyam; Sinding, Mikkel-Holger S.; Ramos-Madrigal, Jazm; Niemann, Jonas; Samaniego Castruita, Jose A.; Vieira, Filipe G.; Carøe, Christian; Montero, Marc de Manuel; Kuderna, Lukas; Serres, Aitor; González-Basallote, Víctor Manuel; Liu, Yan-Hu; Wang, Guo-Dong; Marques-Bonet, Tomas; Mirarab, Siavash; Fernandes, Carlos; Gaubert, Philippe; Koepfli, Klaus-Peter; Budd, Jane; Rueness, Eli Knispel; Heide-Jørgensen, Mads Peter; Petersen, Bent; Sicheritz-Ponten, Thomas; Bachmann, Lutz; Wiig, Øystein; Hansen, Anders J.; Gilbert, M. T. (2018)
    The evolutionary history of the wolf-like canids of the genus Canis has been heavily debated, especially regarding the number of distinct species and their relationships at the population and species level 1-6]. We assembled ...
  • Publisher Correction: The tuatara genome reveals ancient features of amniote evolution 
    Gemmell, Neil J.; Rutherford, Kim; Prost, Stefan; Tollis, Marc; Winter, David; Macey, J. R.; Adelson, David L.; Suh, Alexander; Bertozzi, Terry; Grau, José H.; Organ, Chris; Gardner, Paul P.; Muffato, Matthieu; Patricio, Mateus; Billis, Konstantinos; Martin, Fergal J.; Flicek, Paul; Petersen, Bent; Kang, Lin; Michalak, Pawel; Buckley, Thomas R.; Wilson, Melissa; Cheng, Yuanyuan; Miller, Hilary; Schott, Ryan K.; Jordan, Melissa D.; Newcomb, Richard D.; Arroyo, José Ignacio; Valenzuela, Nicole; Hore, Tim A.; Renart, Jaime; Peona, Valentina; Peart, Claire R.; Warmuth, Vera M.; Zeng, Lu; Kortschak, R. D.; Raison, Joy M.; Zapata, Valeria Velásquez; Wu, Zhiqiang; Santesmasses, Didac; Mariotti, Marco; Guigó, Roderic; Rupp, Shawn M.; Twort, Victoria G.; Dussex, Nicolas; Taylor, Helen; Abe, Hideaki; Bond, Donna M.; Paterson, James M.; Mulcahy, Daniel G.; González, Vanessa L.; Barbieri, Charles G.; DeMeo, Dustin P.; Pabinger, Stephan; Van Stijn, Tracey; Clarke, Shannon; Ryder, Oliver; Edwards, Scott V.; Salzberg, Steven L.; Anderson, Lindsay; Nelson, Nicola; Stone, Clive (2020)
  • The tuatara genome reveals ancient features of amniote evolution 
    Gemmell, Neil J.; Rutherford, Kim; Prost, Stefan; Tollis, Marc; Winter, David; Macey, J. R.; Adelson, David L.; Suh, Alexander; Bertozzi, Terry; Grau, José H.; Organ, Chris; Gardner, Paul P.; Muffato, Matthieu; Patricio, Mateus; Billis, Konstantinos; Martin, Fergal J.; Flicek, Paul; Petersen, Bent; Kang, Lin; Michalak, Pawel; Buckley, Thomas R.; Wilson, Melissa; Cheng, Yuanyuan; Miller, Hilary; Schott, Ryan K.; Jordan, Melissa D.; Newcomb, Richard D.; Arroyo, José Ignacio; Valenzuela, Nicole; Hore, Tim A.; Renart, Jaime; Peona, Valentina; Peart, Claire R.; Warmuth, Vera M.; Zeng, Lu; Kortschak, R. D.; Raison, Joy M.; Zapata, Valeria Velásquez; Wu, Zhiqiang; Santesmasses, Didac; Mariotti, Marco; Guigó, Roderic; Rupp, Shawn M.; Twort, Victoria G.; Dussex, Nicolas; Taylor, Helen; Abe, Hideaki; Bond, Donna M.; Paterson, James M.; Mulcahy, Daniel G.; González, Vanessa L.; Barbieri, Charles G.; DeMeo, Dustin P.; Pabinger, Stephan; Van Stijn, Tracey; Clarke, Shannon; Ryder, Oliver; Edwards, Scott V.; Salzberg, Steven L.; Anderson, Lindsay; Nelson, Nicola; Stone, Clive (2020)
  • Whole-genome analyses resolve early branches in the tree of life of modern birds 
    Jarvis, Erich D.; Mirarab, Siavash; Aberer, Andre J.; Li, Bo; Houde, Peter; Li, Cai; Ho, Simon Y. W.; Faircloth, Brant C.; Nabholz, Benoit; Howard, Jason T.; Suh, Alexander; Weber, Claudia C.; Fonseca, Rute R. da; Li, Jianwen; Zhang, Fang; Li, Hui; Zhou, Long; Narula, Nitish; Liu, Liang; Ganapathy, Ganesh; Boussau, Bastien; Bayzid, Md Shamsuzzoha; Zavidovych, Volodymyr; Subramanian, Sankar; Gabaldón, Toni; Capella-Gutiérrez, Salvador; Huerta-Cepas, Jaime; Rekepalli, Bhanu; Munch, Kasper; Schierup, Mikkel; Lindow, Bent; Warren, Wesley C.; Ray, David; Green, Richard E.; Bruford, Michael W.; Zhan, Xiangjiang; Dixon, Andrew; Li, Shengbin; Li, Ning; Huang, Yinhua; Derryberry, Elizabeth P.; Bertelsen, Mads Frost; Sheldon, Frederick H.; Brumfield, Robb T.; Mello, Claudio V.; Lovell, Peter V.; Wirthlin, Morgan; Schneider, Maria Paula Cruz; Prosdocimi, Francisco; Samaniego, José Alfredo; Velazquez, Amhed Missael Vargas; Alfaro-Núñez, Alonzo; Campos, Paula F.; Petersen, Bent; Sicheritz-Ponten, Thomas; Pas, An; Bailey, Tom; Scofield, Paul; Bunce, Michael; Lambert, David M.; Zhou, Qi; Perelman, Polina; Driskell, Amy C.; Shapiro, Beth; Xiong, Zijun; Zeng, Yongli; Liu, Shiping; Li, Zhenyu; Liu, Binghang; Wu, Kui; Xiao, Jin; Yinqi, Xiong; Zheng, Qiuemei; Zhang, Yong; Yang, Huanming; Wang, Jian; Smeds, Linnea; Rheindt, Frank E.; Braun, Michael J.; Fjeldsa, Jon; Orlando, Ludovic; Barker, F. K.; Jønsson, Knud Andreas; Johnson, Warren E.; Koepfli, Klaus-Peter; O'Brien, Stephen; Haussler, David; Ryder, Oliver A.; Rahbek, Carsten; Willerslev, Eske; Graves, Gary R.; Glenn, Travis C.; McCormack, John; Burt, Dave; Ellegren, Hans; Alström, Per; Edwards, Scott V.; Stamatakis, Alexandros; Mindell, David P.; Cracraft, Joel; Braun, Edward L.; Warnow, Tandy; Jun, Wang; Gilbert, M. T.; Zhang, Guojie (2014)
    To better determine the history of modern birds, we performed a genome-scale phylogenetic analysis of 48 species representing all orders of Neoaves using phylogenomic methods created to handle genome-scale data. We recovered ...

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