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Browsing by Author "Ho, Simon Y. W."

Browsing by Author "Ho, Simon Y. W."

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  • Boomeranging around Australia: Historical biogeography and population genomics of the anti-equatorial fish <I>Microcanthus strigatus</I> (Teleostei: Microcanthidae) 
    Tea, Yi-Kai; Van Der Wal, Cara; Ludt, William B.; Gill, Anthony C.; Lo, Nathan; Ho, Simon Y. W. (2019)
    The geographic distributions of marine fishes have been shaped by ancient vicariance and ongoing dispersal events. Some species exhibit anti-equatorial distributions, inhabiting temperate regions on both sides of the tropics ...
  • Complexity of avian evolution revealed by family-level genomes 
    Stiller, Josefin; Feng, Shaohong; Chowdhury, Al-Aabid; Rivas-González, Iker; Duchêne, David A.; Fang, Qi; Deng, Yuan; Kozlov, Alexey; Stamatakis, Alexandros; Claramunt, Santiago; Nguyen, Jacqueline M. T.; Ho, Simon Y. W.; Faircloth, Brant C.; Haag, Julia; Houde, Peter; Cracraft, Joel; Balaban, Metin; Mai, Uyen; Chen, Guangji; Gao, Rongsheng; Zhou, Chengran; Xie, Yulong; Huang, Zijian; Cao, Zhen; Yan, Zhi; Ogilvie, Huw A.; Nakhleh, Luay; Lindow, Bent; Morel, Benoit; Fjeldså, Jon; Hosner, Peter A.; Da Fonseca, Rute R.; Petersen, Bent; Tobias, Joseph A.; Székely, Tamás; Kennedy, Jonathan David; Reeve, Andrew Hart; Liker, Andras; Stervander, Martin; Antunes, Agostinho; Tietze, Dieter Thomas; Bertelsen, Mads; Lei, Fumin; Rahbek, Carsten; Graves, Gary R.; Schierup, Mikkel H.; Warnow, Tandy; Braun, Edward L.; Gilbert, M. T.; Jarvis, Erich D.; Mirarab, Siavash; Zhang, Guojie (2024)
  • Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, <I>Homotherium latidens</I> 
    Barnett, Ross; Westbury, Michael V.; Sandoval-Velasco, Marcela; Vieira, Filipe Garrett; Jeon, Sungwon; Zazula, Grant; Martin, Michael D.; Ho, Simon Y. W.; Mather, Niklas; Gopalakrishnan, Shyam; Ramos-Madrigal, Jazmin; de Manuel, Marc; Zepeda-Mendoza, M. Lisandra; Antunes, Agostinho; Baez, Aldo Carmona; De Cahsan, Binia; Larson, Greger; O'Brien, Stephen J.; Eizirik, Eduardo; Johnson, Warren E.; Koepfli, Klaus-Peter; Wilting, Andreas; Fickel, Jorns; Dalen, Love; Lorenzen, Eline D.; Marques-Bonet, Tomas; Hansen, Anders J.; Zhang, Guojie; Bhak, Jong; Yamaguchi, Nobuyuki; Gilbert, M. Thomas P. (2020)
    Homotherium was a genus of large-bodied scimitar-toothed cats, morphologically distinct from any extant felid species, that went extinct at the end of the Pleistocene [1-4]. They possessed large, saber-form serrated canine ...
  • Molecular species delimitation in the primitively segmented spider genus <I>Heptathela</I> endemic to Japanese islands 
    Xu, Xin; Kuntner, Matjaž; Bond, Jason E.; Ono, Hirotsugu; Ho, Simon Y. W.; Liu, Fengxiang; Yu, Long; Li, Daiqin (2020)
  • One Hundred Twenty Years of Koala Retrovirus Evolution Determined from Museum Skins 
    Ávila-Arcos, María C.; Ho, Simon Y. W.; Ishida, Yasuko; Nikolaidis, Nikolas; Tsangaras, Kyriakos; Honig, Karin; Medina, Rebeca; Rasmussen, Morten; Fordyce, Sarah L.; Calvignac-Spencer, Sébastien; Willerslev, Eske; Gilbert, M. Thomas P.; Helgen, Kristofer M.; Roca, Alfred L.; Greenwood, Alex D. (2012)
  • Phylogenomic Analysis of Ultraconserved Elements Resolves the Evolutionary and Biogeographic History of Segmented Trapdoor Spiders 
    Xu, Xin; Su, Yong-Chao; Ho, Simon Y. W.; Kuntner, Matjaž; Ono, Hirotsugu; Liu, Fengxiang; Chang, Chia-Chen; Warrit, Natapot; Sivayyapram, Varat; Khin Pyae Pyae Aung; Dinh Sac Pham; Norma-Rashid, Y.; Li, Daiqin (2021)
    The segmented trapdoor spiders (Liphistiidae) are the sole surviving family of the suborder Mesothelae, which forms the sister lineage to all other living spiders. Liphistiids have retained a number of plesiomorphic traits ...
  • Species-specific responses of Late Quaternary megafauna to climate and humans 
    Lorenzen, Eline D.; Nogues-Bravo, David; Orlando, Ludovic; Weinstock, Jaco; Binladen, Jonas; Marske, Katharine A.; Ugan, Andrew; Borregaard, Michael K.; Gilbert, M. Thomas P.; Nielsen, Rasmus; Ho, Simon Y. W.; Goebel, Ted; Graf, Kelly E.; Byers, David; Stenderup, Jesper T.; Rasmussen, Morten; Campos, Paula F.; Leonard, Jennifer A.; Koepfli, Klaus-Peter; Froese, Duane; Zazula, Grant; Stafford, Jr, Thomas W.; Aaris-Sørensen, Kim; Batra, Persaram; Haywood, Alan M.; Singarayer, Joy S.; Valdes, Paul J.; Boeskorov, Gennady; Burns, James A.; Davydov, Sergey P.; Haile, James; Jenkins, Dennis L.; Kosintsev, Pavel; Kuznetsova, Tatyana; Lai, Xulong; Martin, Larry D.; McDonald, H. Gregory; Mol, Dick; Meldgaard, Morten; Munch, Kasper; Stephan, Elisabeth; Sablin, Mikhail; Sommer, Robert S.; Sipko, Taras; Scott, Eric; Suchard, Marc A.; Tikhonov, Alexei; Willerslev, Rane; Wayne, Robert K.; Cooper, Alan; Hofreiter, Michael; Sher, Andrei; Shapiro, Beth; Rahbek, Carsten; Willerslev, Eske (2011)
    Despite decades of research, the roles of climate and humans in driving the dramatic extinctions of large-bodied mammals during the Late Quaternary period remain contentious. Here we use ancient DNA, species distribution ...
  • Using phylogenetics to explore interspecies genetic rescue options for a critically endangered parrot 
    Hogg, Carolyn J.; Morrison, Caitlin; Dudley, Jessica S.; Alquezar-Planas, David E.; Beasley-Hall, Perry G.; Magrath, Michael J. L.; Ho, Simon Y. W.; Lo, Nathan; Johnson, Rebecca N.; Grueber, Catherine E. (2021)
    As the global biodiversity crisis deepens, with increasing habitat fragmentation and a changing climate, innovative options for conserving species are being explored. One such conservation action is genetic rescue: ...
  • Whole-genome analyses resolve early branches in the tree of life of modern birds 
    Jarvis, Erich D.; Mirarab, Siavash; Aberer, Andre J.; Li, Bo; Houde, Peter; Li, Cai; Ho, Simon Y. W.; Faircloth, Brant C.; Nabholz, Benoit; Howard, Jason T.; Suh, Alexander; Weber, Claudia C.; Fonseca, Rute R. da; Li, Jianwen; Zhang, Fang; Li, Hui; Zhou, Long; Narula, Nitish; Liu, Liang; Ganapathy, Ganesh; Boussau, Bastien; Bayzid, Md Shamsuzzoha; Zavidovych, Volodymyr; Subramanian, Sankar; Gabaldón, Toni; Capella-Gutiérrez, Salvador; Huerta-Cepas, Jaime; Rekepalli, Bhanu; Munch, Kasper; Schierup, Mikkel; Lindow, Bent; Warren, Wesley C.; Ray, David; Green, Richard E.; Bruford, Michael W.; Zhan, Xiangjiang; Dixon, Andrew; Li, Shengbin; Li, Ning; Huang, Yinhua; Derryberry, Elizabeth P.; Bertelsen, Mads Frost; Sheldon, Frederick H.; Brumfield, Robb T.; Mello, Claudio V.; Lovell, Peter V.; Wirthlin, Morgan; Schneider, Maria Paula Cruz; Prosdocimi, Francisco; Samaniego, José Alfredo; Velazquez, Amhed Missael Vargas; Alfaro-Núñez, Alonzo; Campos, Paula F.; Petersen, Bent; Sicheritz-Ponten, Thomas; Pas, An; Bailey, Tom; Scofield, Paul; Bunce, Michael; Lambert, David M.; Zhou, Qi; Perelman, Polina; Driskell, Amy C.; Shapiro, Beth; Xiong, Zijun; Zeng, Yongli; Liu, Shiping; Li, Zhenyu; Liu, Binghang; Wu, Kui; Xiao, Jin; Yinqi, Xiong; Zheng, Qiuemei; Zhang, Yong; Yang, Huanming; Wang, Jian; Smeds, Linnea; Rheindt, Frank E.; Braun, Michael J.; Fjeldsa, Jon; Orlando, Ludovic; Barker, F. K.; Jønsson, Knud Andreas; Johnson, Warren E.; Koepfli, Klaus-Peter; O'Brien, Stephen; Haussler, David; Ryder, Oliver A.; Rahbek, Carsten; Willerslev, Eske; Graves, Gary R.; Glenn, Travis C.; McCormack, John; Burt, Dave; Ellegren, Hans; Alström, Per; Edwards, Scott V.; Stamatakis, Alexandros; Mindell, David P.; Cracraft, Joel; Braun, Edward L.; Warnow, Tandy; Jun, Wang; Gilbert, M. T.; Zhang, Guojie (2014)
    To better determine the history of modern birds, we performed a genome-scale phylogenetic analysis of 48 species representing all orders of Neoaves using phylogenomic methods created to handle genome-scale data. We recovered ...

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