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Browsing by Author "Breinholt, Jesse W."

Browsing by Author "Breinholt, Jesse W."

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  • Comprehensive phylogeny of Pieridae butterflies reveals strong correlation between diversification and temperature 
    Carvalho, Ana Paula S.; Owens, Hannah L.; St Laurent, Ryan A.; Earl, Chandra; Dexter, Kelly M.; Messcher, Rebeccah L.; Willmott, Keith R.; Aduse-Poku, Kwaku; Collins, Steve C.; Homziak, Nicholas T.; Hoshizaki, Sugihiko; Hsu, Yu-Feng; Kizhakke, Athulya G.; Kunte, Krushnamegh; Martins, Dino J.; Mega, Nicolás O.; Morinaka, Sadaharu; Peggie, Djunijanti; Romanowski, Helena P.; Sáfián, Szabolcs; Vila, Roger; Wang, Houshuai; Braby, Michael F.; Espeland, Marianne; Breinholt, Jesse W.; Pierce, Naomi E.; Kawahara, Akito Y.; Lohman, David J. (2024)
  • The Emergence of Lobsters: Phylogenetic Relationships, Morphological Evolution and Divergence Time Comparisons of an Ancient Group (Decapoda: Achelata, Astacidea, Glypheidea, Polychelida) 
    Bracken-Grissom, Heather; Ahyong, Shane T; Wilkinson, Richard D.; Feldmann, Rodney M.; Schweitzer, Carrie E.; Breinholt, Jesse W.; Bendall, Matthew; Palero, Ferran; Chan, Tin-Yam; Felder, Darryl L.; Robles, Rafael; Chu, Ka-Hou; Tsang, Ling-Ming; Kim, Dohyup; Martin, Joel W.; Crandall, Keith A. (2014)
    Lobsters are a ubiquitous and economically important group of decapod crustaceans that includes the infraorders Polychelida, Glypheidea, Astacidea and Achelata. They include familiar forms such as the spiny, slipper, clawed ...
  • A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins 
    Kawahara, Akito Y.; Storer, Caroline; Carvalho, Ana Paula S.; Plotkin, David M.; Condamine, Fabien L.; Braga, Mariana P.; Ellis, Emily A.; St Laurent, Ryan A.; Li, Xuankun; Barve, Vijay; Cai, Liming; Earl, Chandra; Frandsen, Paul B.; Owens, Hannah L.; Valencia-Montoya, Wendy A.; Aduse-Poku, Kwaku; Toussaint, Emmanuel F. A.; Dexter, Kelly M.; Doleck, Tenzing; Markee, Amanda; Messcher, Rebeccah; Nguyen, Y-Lan; Badon, Jade Aster T.; Benítez, Hugo A.; Braby, Michael F.; Buenavente, Perry A. C.; Chan, Wei-Ping; Collins, Steve C.; Rabideau Childers, Richard A.; Dankowicz, Even; Eastwood, Rod; Fric, Zdenek F.; Gott, Riley J.; Hall, Jason P. W.; Hallwachs, Winnie; Hardy, Nate B.; Sipe, Rachel L. Hawkins; Heath, Alan; Hinolan, Jomar D.; Homziak, Nicholas T.; Hsu, Yu-Feng; Inayoshi, Yutaka; Itliong, Micael G. A.; Janzen, Daniel H.; Kitching, Ian J.; Kunte, Krushnamegh; Lamas, Gerardo; Landis, Michael J.; Larsen, Elise A.; Larsen, Torben B.; Leong, Jing V.; Lukhtanov, Vladimir; Maier, Crystal A.; Martinez, Jose I.; Martins, Dino J.; Maruyama, Kiyoshi; Maunsell, Sarah C.; Mega, Nicolás Oliveira; Monastyrskii, Alexander; Morais, Ana B. B.; Müller, Chris J.; Naive, Mark Arcebal K.; Nielsen, Gregory; Padrón, Pablo Sebastián; Peggie, Djunijanti; Romanowski, Helena Piccoli; Sáfián, Szabolcs; Saito, Motoki; Schröder, Stefan; Shirey, Vaughn; Soltis, Doug; Soltis, Pamela; Sourakov, Andrei; Talavera, Gerard; Vila, Roger; Vlasanek, Petr; Wang, Houshuai; Warren, Andrew D.; Willmott, Keith R.; Yago, Masaya; Jetz, Walter; Jarzyna, Marta A.; Breinholt, Jesse W.; Espeland, Marianne; Ries, Leslie; Guralnick, Robert P.; Pierce, Naomi E.; Lohman, David J. (2023)
    Butterflies are a diverse and charismatic insect group that are thought to have evolved with plants and dispersed throughout the world in response to key geological events. However, these hypotheses have not been extensively ...
  • A molecular phylogeny and revised higher-level classification for the leaf-mining moth family Gracillariidae and its implications for larval host-use evolution 
    Kawahara, Akito Y.; Plotkin, David; Ohshima, Issei; Lopez-Vaamonde, Carlos; Houlihan, Peter R.; Breinholt, Jesse W.; Kawakita, Atsushi; Xiao, Lei; Regier, Jerome C.; Davis, Donald R.; Kumata, Tosio; Sohn, Jae-Cheon; De Prins, Jurate; Mitter, Charles (2017)
    Gracillariidae are one of the most diverse families of internally feeding insects, and many species are economically important. Study of this family has been hampered by lack of a robust and comprehensive phylogeny. In the ...
  • A phylogenomic framework, evolutionary timeline and genomic resources for comparative studies of decapod crustaceans 
    Wolfe, Joanna M.; Breinholt, Jesse W.; Crandall, Keith A.; Lemmon, Alan R.; Lemmon, Emily Moriarty; Timm, Laura E.; Siddall, Mark E.; Bracken-Grissom, Heather (2019)
    Comprising over 15 000 living species, decapods (crabs, shrimp and lobsters) are the most instantly recognizable crustaceans, representing a considerable global food source. Although decapod systematics have received much ...
  • Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths 
    Kawahara, Akito Y.; Plotkin, David; Espeland, Marianne; Meusemann, Karen; Toussaint, Emmanuel F. A.; Donath, Alexander; Gimnich, France; Frandsen, Paul B.; Zwick, Andreas; Dos Reis, Mario; Barber, Jesse R.; Peters, Ralph S.; Liu, Shanlin; Zhou, Xin; Mayer, Christoph; Podsiadlowski, Lars; Storer, Caroline; Yack, Jayne E.; Misof, Bernhard; Breinholt, Jesse W. (2019)
    Butterflies and moths (Lepidoptera) are one of the major superradiations of insects, comprising nearly 160,000 described extant species. As herbivores, pollinators, and prey, Lepidoptera play a fundamental role in almost ...
  • Phylogeny and classification of Odonata using targeted genomics 
    Bybee, Seth M.; Kalkman, Vincent J.; Erickson, Robert J.; Frandsen, Paul B.; Breinholt, Jesse W.; Suvorov, Anton; Dijkstra, Klaas-Douwe B.; Cordero-Rivera, Adolfo; Skevington, Jeffrey H.; Abbott, John C.; Herrera, Melissa Sanchez; Lemmon, Alan R.; Lemmon, Emily Moriarty; Ware, Jessica L. (2021)
    Dragonflies and damselflies are a charismatic, medium-sized insect order (similar to 6300 species) with a unique potential to approach comparative research questions. Their taxonomy and many ecological traits for a large ...
  • Status, Distribution, and Genetics of Blair&#39;s Fencing Crayfish, <I>Faxonella Blairi</I> (Decapoda: Cambaridae) 
    Robison, Henry W.; McAllister, Chris T.; Breinholt, Jesse W.; Crandall, Keith A. (2014)
    During a multi-year study of the rare Blair&#39;s fencing crayfish (Faxonella blairi Hayes and Reimer), we made 87 collections in 10 counties throughout the West Gulf Coastal Plain of southwestern Arkansas. Intensive ...
  • Underground evolution: New roots for the old tree of lumbricid earthworms 
    Domínguez, Jorge; Aira, Manuel; Breinholt, Jesse W.; Stojanovic, Mirjana; James, Samuel W.; Pérez-Losada, Marcos (2015)
    Earthworms belonging to the family Lumbricidae are extremely abundant in terrestrial temperate regions. They affect soil properties and nutrient cycling, thus shaping plant community composition and aboveground food webs. ...
  • Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms 
    Speiser, Daniel I.; Pankey, M. S.; Zaharoff, Alexander K.; Battelle, Barbara A.; Bracken-Grissom, Heather; Breinholt, Jesse W.; Bybee, Seth M.; Cronin, Thomas W.; Garm, Anders; Lindgren, Annie R.; Patel, Nipam H.; Porter, Megan L.; Protas, Meredith E.; Rivera, Ajna S.; Serb, Jeanne M.; Zigler, Kirk S.; Crandall, Keith A.; Oakley, Todd H. (2014)
    BACKGROUND: Tools for high throughput sequencing and de novo assembly make the analysis of transcriptomes (i.e. the suite of genes expressed in a tissue) feasible for almost any organism. Yet a challenge for biologists is ...

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