Tansley insight Crassulacean acid metabolism: a continuous or discrete trait? Author for correspondence: Klaus Winter Tel: +507 212 8131 Email: winterk@si.edu Received: 21 January 2015 Accepted: 22 March 2015 Klaus Winter1, Joseph A. M. Holtum2 and J. Andrew C. Smith3 1SmithsonianTropical Research Institute, POBox 0843-03092, Balboa, Ancon,Republic of Panama; 2Centre for Tropical Biodiversity and Climate Change, James CookUniversity, Townsville, QLD 4811, Australia; 3Department of Plant Sciences, University of Oxford, South Parks Road, Oxford, OX1 3RB, UK Contents Summary 1 I. Introduction 1 II. Phenotypic diversity 2 III. Ecological context 2 IV. Structure–function context 3 V. Biochemical–genomics context 4 VI. Transitional states? 4 VII. Conclusions – what is a CAM plant? 5 Acknowledgements 5 References 5 New Phytologist (2015) doi: 10.1111/nph.13446 Key words: C3 photosynthesis, CAM photosynthesis, carbon-isotope ratio d13C, crassulacean acid metabolism (CAM), evolution, phosphoenolpyruvate carboxylase. Summary The key components of crassulacean acid metabolism (CAM) – nocturnal fixation of atmospheric CO2 and its processing via Rubisco in the subsequent light period – are now reasonably well understood in terms of the biochemical reactions defining this water-saving mode of carbon assimilation. Phenotypically, however, the degree to which plants engage in the CAM cycle relative to regular C3 photosynthesis is highly variable. Depending upon species, ontogeny and environment, the contribution of nocturnal CO2 fixation to 24-h carbon gain can range continuously from close to 0% to 100%. Nevertheless, not all possible combinations of light and dark CO2 fixation appear equally common. Large-scale surveys of carbon-isotope ratios typically show a strongly bimodal frequency distribution, with relatively few intermediate values. Recent research has revealed that many species capable of low-level CAM activity are nested within the peak of C3-type isotope signatures. While questions remain concerning the adaptive significance of dark CO2 fixation in such species, plants with low-level CAM should prove valuable models for investigating the discrete changes in genetic architecture and gene expression that have enabled the evolutionary transition from C3 to CAM. I. Introduction Crassulacean acid metabolism (CAM) is a water-conserving mode of photosynthesis and one of three photosynthetic pathways in vascular plants. CAM and C4 are modifications of the basic C3 pathway and represent CO2-concentrating mechanisms that elevate [CO2] around Rubisco and suppress photorespiration. In CAM, this is achieved in two principal phases separated in time. At night, atmospheric CO2 is incorporated by phosphoenolpyruvate carboxylase (PEPC) via oxaloacetate into malic acid, which accumulates in the large vacuoles of chloroplast-containing mesophyll cells. During the following light period, malic acid is released from the vacuoles and decarboxylated, and the CO2 thus liberated is refixed by Rubisco and reduced in the Calvin cycle (Osmond, 1978; Winter & Smith, 1996). Decarboxylation of malate generates high intercellular [CO2] and is associated with stomatal closure, minimizing water loss in the middle of the day when evaporative demand is highest. In common garden experiments to compare growth rates under identical conditions, plant biomass production per unit water No claim to original US government works New Phytologist 2015 New Phytologist Trust New Phytologist (2015) 1 www.newphytologist.com Review utilized was 6 or 2 times higher for CAM than for C3 or C4, respectively (Winter et al., 2005). MaximumCO2 uptake rates per unit surface area are generally lower in CAM plants than in C3 and C4 plants, but this is partially offset by the fact that almost the entire shoot surface is photosynthetic in typical CAM plants, as in agaves and cacti. Furthermore, in terms of the overall energetics of carbon assimilation, CAM is estimated to represent a fairly small marginal cost of c. 10% relative to the C3 pathway (Winter & Smith, 1996), and indeed CAM plants typically grow in open or exposed habitats in which incident light energy is not the primary factor limiting growth. Thus, annual productivities of CAM plants can be considerable (Nobel, 1988), and agaves, platyopuntias and other CAM species have been proposed as potential biofuel crops on land not suitable for conventionalC3 andC4 crops (Borland et al., 2009; Davis et al., 2011; Holtum et al., 2011). The effect of leaf or photosynthetic–stem area ratio on the relative growth rate of CAM species has never been rigorously quantified. A comparison of agaves and platyopuntias with arborescent CAM species that allocate substantial biomass to a woody, nonphotosynthetic stem (e.g. in the genus Clusia ; L€uttge, 2006) would be informative. Amongst the estimated 350 000 species of vascular plants, c. 6% are believed capable of CAM photosynthesis, belonging to at least 35 families and over 400 genera, and outnumbering C4 species approximately two-fold (Winter & Smith, 1996; Yang et al., 2015). Most of the longer lived stem-succulent CAM species of large stature inhabit warm, seasonally dry habitats such as semi- deserts with little, but relatively predictable, seasonal rainfall (Ellenberg, 1981). The extant diversity of these and other major terrestrial CAM lineages seems to have arisen largely during the global expansion of arid environments in the lateMiocene (Arakaki et al., 2011; Horn et al., 2014). Among epiphytic lineages, CAM is considered to have enabled diversification of the more extreme epiphytic life-forms occupying arid microhabitats in forest cano- pies, notably in the tropical Bromeliaceae and Orchidaceae (Crayn et al., 2004, 2015; Silvera et al., 2009). CAM is not onlymultifaceted in terms of diversity of species and habitats. There is also continuous variation in the extent to which species engage in CAM relative to C3 photosynthesis. The fact that the engagement of CAM is not an all-or-nothing phenomenon raises fundamental questions about both the ecological significance and evolutionary origins of CAM. II. Phenotypic diversity CAM comes in many variants, differing, for example, in the enzymes of malate decarboxylation, and the type and compart- mentation of storage carbohydrates that fluctuate reciprocally with malic acid (Holtum et al., 2005). Above all, CAMprovides some of the best examples of phenotypic diversity and plasticity in the plant kingdom, for example in the form of facultative CAM species such as the annuals Mesembryanthemum crystallinum (Aizoaceae) and Calandrinia polyandra (Montiaceae), or some perennial species of Clusia (Clusiaceae), in all of which CAM is drought-inducible (Winter et al., 2008; Winter & Holtum, 2014). Over a relatively short period, these plants have the ability to transition progressively from full C3 to full CAM and vice versa. Even in obligate CAM species such as desert cacti, there is an ontogenetic progression fromC3 toCAMas tissuesmature (Winter et al., 2008, 2011). Indeed, most species regarded as constitutive CAMplants also incorporate, to varying degrees, atmospheric CO2 directly in the light via Rubisco. Depending on species, environ- mental conditions and developmental status, the contribution of nocturnal CO2 gain to total daily carbon gain may range from 100% to close to 0% (Winter & Holtum, 2002, 2014). In its weakest form, CAM is merely evident as a small nocturnal increase in tissue titratable acidity. Nocturnal H+ increases of c. 1 mmol kg1 fresh mass 12 h1 currently represent the limit of detection for low-level CAM. They may correspond to average CO2 fixation rates of < 0.05 lmol m 2 s1, which are challenging to resolve with conventional gas-exchange systems against respira- tory background CO2 effluxes of typically c. 1 lmol m 2 s1. CO2 fixation via PEPC at night is by no means exclusive to CAM. All C3 plants presumably have the capacity to fix CO2 in the dark, as can be detected in 14CO2 tracer studies (Kunitake et al., 1959). While the nocturnal fixation of CO2 and the linked stoichiometric accumulation of malic acid (Medina & Osmond, 1981) may be unique to CAM, PEP carboxylation and accumu- lation and decarboxylation cycles of the malate anion are not; these are integral to the maintenance of charge balance during processes such as NO3  reduction and changes in stomatal aperture (Smith et al., 1996; Martinoia et al., 2012). Moreover, the essential enzyme and transport reactions needed for CAM are all seemingly present in C3 plants. Given the fundamental nature of these metabolic processes, the questions arise: where does C3 end and CAM begin; are the differences between C3 and CAM of a qualitative or merely quantitative nature; is CAM a continuous or a discrete trait? III. Ecological context On the basis of the wide spectrum of CAM phenotypes recogniz- able in CO2 exchange studies, it is tempting to conclude that CAM is a continuous trait. However, it is notable that in large-scale surveys of d13C values (a measure of the ratio of 13C : 12C), which serve as integrated long-term proxies of the ratio of CO2 fixed during the day to that fixed during the night by plants in their natural habitat (Cernusak et al., 2013), d13C values are not equally distributed over the whole range of possible values (Fig. 1). Rather, their distribution is typically bimodal, with a minimum in the frequency distribution at c.20&. Based on the linear relationship observed between the d13C value and the proportion of CO2 fixed at night, this value would correspond to a c. 40% contribution of dark CO2 fixation to total carbon gain (Winter &Holtum, 2002). As yet, the ecological significance of this minimum is not fully understood, but it might somehow reflect a fitness cost of intermediate phenotypes, or a paucity of habitats in which such an intermediate phenotype is favoured. Ongoing research, especially in the Orchidaceae, is revealing the occurrence of low-level CAM in many species with C3-type d 13C values, possibly indicating a second frequency peak of species capable of CAM nested within the C3 cluster of isotope values (Silvera et al., 2005). New Phytologist (2015) No claim to original US government works New Phytologist 2015 New Phytologist Trustwww.newphytologist.com Review Tansley insight New Phytologist2 IV. Structure–function context CAM is in essence a single-cell phenomenon. This contrasts with the greater structural complexity of the dual-cell anatomy typical of C4 plants, which necessitates close metabolic coor- dination between mesophyll and bundle-sheath cells and has been linked to as many as 25 forms of Kranz anatomy (Aubry et al., 2014). But by virtue of being confined to individual chlorenchyma cells, operation of the CAM cycle must be underpinned by strict temporal control of the carboxylation and decarboxylation reactions if carbon assimilation is to be optimized and futile cycling kept to a minimum (Smith & Bryce, 1992; Borland et al., 2011). Further structural hallmarks of CAM are manifested at the higher morphological levels of tissues and organs, most character- istically in the succulent leaves and stems that endow the shoot with a low surface area : volume ratio and high water-storage capaci- tance. The tightly packed, thin-walled, highly vacuolated cells that make up the chlorenchyma tissuemaximize the storage capacity for malic acid per unit surface area of shoot across which uptake of atmospheric CO2 occurs (Smith et al., 1996). In fact, CAM plants in general are characterized by relatively low stomatal densities on their shoot surfaces and low maximal stomatal conductances (Pfeffer, 1897; Kluge & Ting, 1978; Gibson, 1982; Zambrano et al., 2014), which although helping to restrict water loss in transpiration also act as a partial constraint on maximum daily carbon gain. Increased succulence of photosynthetic tissues may be one of the key preconditioning traits for CAM (Ogburn & Edwards, 2010; Edwards & Ogburn, 2012). This is convincingly seen in clades possessing a full spectrum of intermediate phenotypes such as the Orchidaceae, inwhich the trend fromC3 throughC3–CAMspecies to strongly expressed CAM is associated with progressively increasing succulence (Fig. 2). A similar relationship is also seen in other families in which a wide range of leaf morphologies have been studied, such as the Polypodiaceae (Winter et al., 1983), Bromeliaceae (Baresch et al., 2011), Clusiaceae (Zambrano et al., 2014) and Crassulaceae (Teeri et al., 1981; Kluge et al., 1993). Another correlate of succulence and tight cell packing in the chlorenchyma is the reduction in intercellular air spaces and internal conductance to CO2, which it has been argued favours PEPC-mediated nighttime (phase I) fixation relative to daytime (principally phase IV) fixation directly via Rubisco, as the latter is strongly diffusion-limited (Maxwell et al., 1999; Nelson & Sage, 2008). The transition between the C3 and CAM pathways is thus associated with a complex suite of biochemical and structural tradeoffs that may determine the optimal niches for these plants in their natural environments (cf. Fig. 1). CAM plants are not unique in having their stomata open at night, as many C3 plants maintain stomata partially open in the dark (Darwin, 1898; Caird et al., 2007). In CAMplants, nocturnal stomatal opening is largely mediated by the decline in CO2 concentration in the intercellular air spaces caused by activation of PEPC (Griffiths et al., 2007; von Caemmerer & Griffiths, 2009). Thus, CAM plants do not fix CO2 at night because their stomata open at night; instead, stomatal opening is driven by nocturnal CO2 fixation. The pattern of diel CO2 exchange of Kalancho€e daigremontiana leaves with the lower epidermis removed still resembles that of fully intact leaves (Kluge & Fischer, 1967). Furthermore, net CO2 exchange of roots of leafless CAM orchids exhibits all four phases ofCAMgas exchange as definedbyOsmond (1978), even though the roots lack stomata (Winter et al., 1985). It remains to be seen whether or not stomata of CAM plants have acquired CAM-specific features that help optimize the physiology of CAM. Similarly, there has been considerable discussion about the role played by endogenous circadian rhythms in CAM plants and the requirement for a CAM-specific oscillator for a functional CAM cycle. When studied under constant conditions, many biological processes including CO2 fixation show circadian behaviour related to the action of endogenous oscillators, which are formed from a series of interlocked transcription/translation feedback loops (Dodd et al., 2014). While certain key features of the CAM cycle have long been known to show endogenous circadian rhythmicity under constant conditions (Wilkins, 1959; Hartwell, 2006), the extent to which the operation of the CAM cycle and the growth of δ13C (‰) –32 –28 –24 –20 N um be r o f s pe ci es 200 160 120 100 60 20 0 180 140 80 40 –36 –16 –12 –8 C3– CAM CAMC3 Fig. 1 Frequency histogram of d13C values of species of Bromeliaceae plotted in class intervals of 1& (re-plotted from data in Crayn et al., 2015; copyright © 2015, John Wiley & Sons), showing the strongly bimodal distribution of isotope ratios with a frequency minimum at c. 20&, as is typically observed in large-scale surveys of crassulacean acid metabolism (CAM) species. The two clusters of d13C values more negative and less negative than 20& are principally composed of C3 species and CAM species, respectively. However, nested within the C3 cluster are species that exhibit some degree of CAM activity, based on measurements of nocturnal increases in tissue titratable acidity and nocturnal net CO2 uptake. Thesewe define as C3–CAM species, although their exact number is not yet known accurately because, to date, nocturnal acidification has been tested in relatively few species of Bromeliaceae with d13C values more negative than 20& (Pierceet al., 2002).While this representationof the frequencyofC3– CAMspecies is schematic, it illustrates that theymay be part of a progressive trendof increasingcontributionofdarkCO2fixation to total carbongainwith increasing d13C value. At d13C values above 20&, this trend merges with the cluster of CAM plants that show nocturnal fixation as their dominant mode of carbon assimilation. Analysis of the original data for goodness of fit (G-test) shows that the C3 cluster of d 13C values does not differ significantly from a normal frequency distribution, whereas the CAM cluster does (P < 0.05), reflecting the slightly higher than expected abundance of species with values in the range20 to 17&. No claim to original US government works New Phytologist 2015 New Phytologist Trust New Phytologist (2015) www.newphytologist.com New Phytologist Tansley insight Review 3 CAMplants under natural day : night cycles is dependent upon, or optimized by, aCAM-specific oscillatorwill be a key issue for future research. V. Biochemical–genomics context The enzymes and transporters involved in the CAM cycle appear to be homologues of proteins ubiquitous in C3 species. For instance, pyruvate, orthophosphate dikinase, first discovered in the plant kingdom in C4 and CAM plants (Hatch & Slack, 1968; Kluge & Osmond, 1971), was briefly considered a C4- and CAM-specific novelty, but the enzyme was soon shown to be present in C3 plants as well (Aoyagi & Bassham, 1984). There is some evidence that the gain of CAM is associated with gene duplication and neofunctionalization, allowing the novel isoforms to fulfil CAM-specific functions. Discrete changes may include alterations in expression patterns involving changes in cis-regulatory elements and transcription factors, and/or changes in kinetic properties of key enzymes resulting from adaptive amino acid substitutions. For example, analysis of PEPC genes in the Caryophyllales, an order containing multiple C4 and CAM lineages, indicates that an early genome-wide duplication event before the emergence of land plants was followed by another whole-genome duplication that gave rise to two PEPC gene lineages now found in most eudicots; one of these (ppc-1E1) was then repeatedly duplicated, leading to several gene lineages containing CAM-specific isoforms of PEPC in Aizoaceae, Cactaceae, Portulacaceae and Didiereaceae (Christin et al., 2014). Gene duplication events have also been implicated in the evolution of CAM-specific PEPC isoforms in the monocot family Orchidaceae (Silvera et al., 2014). CAM- specific posttranslational regulation optimizes CAM functioning through diel control of the kinetic properties of CAM PEPC, stimulating dark CO2 fixation and minimizing the futile cycling of CO2 in the light (Winter, 1982; Nimmo, 2000). These day– night changes in PEPC kinetics are brought about through reversible phosphorylation of the enzyme by a specific protein kinase (Hartwell et al., 1996). In principle, these and other changes to CAM could have been initiated by random de novo mutation, or by exploiting the standing genetic variation already present in populations (West-Eberhard et al., 2011). VI. Transitional states? Thus far, it is not known whether weakly expressed CAM and facultative CAM represent transitional states along an ordered stepwise evolutionary trajectory fromC3 to strong CAM (Hancock & Edwards, 2014). Low-level and facultative CAM species are frequently found in the same lineages as species with fully expressed CAM, suggesting common ecological, anatomical and genomic predispositions. However, compared with the extensive carbon- isotope surveys of herbarium material, relatively few species have been tested physiologically for their mode of photosynthesis, so our knowledge of the true extent of low-level CAM is probably very incomplete. The most extensive and systematic information of this sort to date comes from theOrchidaceae, inwhich livingmaterial of 173 species has been studied for day–night changes in titratable acidity (Fig. 2; Silvera et al., 2005). Another challenging question is whether an adaptive benefit or fitness advantage of low-level CAM activity can be convinc- ingly demonstrated. Even if CAM suffices only to minimize the loss of respiratory CO2 at night, as is the case for plants displaying ‘CAM cycling’ (Harris & Martin, 1991; Herrera, 2009), mortality could be reduced during drought stress. However, persuasive evidence for the adaptive significance of low-level CAM is still missing. Some species of Oncidium (Orchidaceae) with C3-type d 13C values, yet showing small and significant rates of net dark CO2 fixation under well-watered and droughted conditions, are highly tolerant to water deficit stress (Katia Silvera, personal communication). An adaptive advantage is more clearly evident for the facultative CAM expressed in species such as M. crystallinum (Winter et al., 1978) and C. polyandra (Winter & Holtum, 2011). Facultative CAM in these annuals combines C3-driven growth after germination in the wet season with prolonged, CAM-based carbon gain at low water cost during the subsequent dry season, thereby aiding reproduction. Drought-stressed plants of M. crystallinum exposed to CO2-free air at night have drastically reduced seed set compared with drought-stressed plants that can take full advantage of CAM (Winter & Ziegler, 1992). Facultative CAM may be an optimal strategy for these annuals in their characteristic habitats, and it is difficult to envision that these plants would be merely transitional forms on their way to a perennial life-style with full CAM. Leaf thickness (mm) N um be r o f s pe ci es 50 40 30 0 20 10 0.40 0.8 1.2 1.6 2.0 >2.0 C3 C3– CAM CAM Fig. 2 Frequency histogram of leaf thickness, plotted in class intervals of 0.2mm,of largelyPanamanian speciesofOrchidaceae forwhichd13Cvalues and nocturnal changes in leaf titratable acidity were determined (based on data in Silvera et al., 2005). Following the nomenclature introduced in Fig. 1, species with d13C values less negative than 20& were considered crassulacean acidmetabolism (CAM) species, while species with d13C values more negative than 20& were considered C3 species or C3–CAM species on thebasisof theabsenceorpresence, respectively, ofnocturnal increases in tissue acidity. New Phytologist (2015) No claim to original US government works New Phytologist 2015 New Phytologist Trustwww.newphytologist.com Review Tansley insight New Phytologist4 VII. Conclusions – what is a CAM plant? Attempts to reconstruct the evolutionary origins of CAM photo- synthesis necessarily involve decisions about the most appropriate character or trait to map onto the phylogenetic trees. A restrictive approach would be to code the presence or absence of strongly expressed CAM as a binary character state, for example when surveys of the study group reveal a clear bimodal distribution of d13C values (cf. Fig. 1). A more inclusive approach would be to code for the occurrence in a taxon of any degree of CAM activity, however small, as detected by measurements of nocturnal CO2 fixation or associated diel acid fluctuations. In itsmostminimalistic form, a complete CAM cycle could theoretically operate with just a single molecule of atmospheric CO2 being fixed by PEPC at night, leading to the storage of a single molecule of malic acid, and generating 1 CO2 during the following day for refixation via Rubisco. This highlights the need for systematic collection of living material to obtain a much more complete picture of lineages possessing the capacity for nocturnal CO2 fixation via the CAM cycle. Furthermore, if low-level CAM is only facultatively expressed, its detection may depend on investigating the species under the precise conditions (e.g. of water deficit stress) that induce this activity. Based on the distinct bimodal distribution of d13C values in taxa where CAM is present (Fig. 1), we propose that the terminology in this field can be rationalized by reserving the simple, unqualified designation ‘CAM species’ or ‘CAM plant’ for taxa that are part of the strong CAM cluster in the frequency histogram of d13C values. These plants will have isotopic signatures less negative than c. 20& and will correspond to species such as agaves and platyopuntias in which CAM makes a substantial, and typically the major, contribution to carbon acquisition. We propose classifying as ‘C3–CAM species’ all taxa in the C3 cluster (d 13C values more negative than 20&) for which some capacity to engage in CAM has been demonstrated, as determined by CO2 exchange and/or nocturnal H+ increase. In these species the CAM cycle is demonstrably present, but C3 photosynthesis clearly remains the principal mechanism of carbon gain (e.g. the gymnosperm Welwitschia mirabilis; von Willert et al., 2005). 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