REPORT Connectivity of populations within and between major biogeographic regions of the tropical Pacific in Conus ebraeus, a widespread marine gastropod T. F. Duda Jr ? H. A. Lessios Received: 20 November 2008 / Accepted: 12 February 2009 / Published online: 3 March 2009  Springer-Verlag 2009 Abstract Information on genetic connectivity and struc- ture of populations in the tropical Pacific is critical for making inferences about the origins and maintenance of diversity in this region. Sequences of the mitochondrial COI gene from 92 individuals of the trans-Pacific gastropod Conus ebraeus from eight localities spanning the tropical Pacific were analyzed to determine whether populations in the western, central, and eastern Pacific exhibit genetic structure, to examine the demographic histories of popula- tions, and to infer patterns of gene flow. A total of 43 unique haplotypes were recovered, including a common haplotype that occurred in six of the eight populations examined. AMOVA and pairwise F-statistics showed that populations in the western and central Pacific were significantly dif- ferentiated from populations in the eastern Pacific, but no other evidence of structure. Bayesian isolation?migration (IM) analysis suggested that populations in the western and central Pacific separated from those in eastern Pacific dur- ing the Pleistocene. Examination of mismatch distributions and results from IM revealed that populations in the western and central Pacific expanded during the Pleistocene. Gene flow across the East Pacific Barrier appears to occur pre- dominantly westward. Keywords Phylogeography  East Pacific Barrier  Conus  Gene flow  Population structure Introduction Distributions of tropical shallow water marine organisms are generally restricted to four well-defined biogeographic regions: the Indo-West Pacific, the eastern Pacific, and the (western and eastern) Atlantic regions (Briggs 1974). These distributions were presumably strongly influenced by past vicariant events due to various barriers to dispersal that separated formerly widespread species. Since the Mesozoic, numerous geophysical events have shaped marine biotas. The closure of the Tethys Seaway, the establishment of the Benguela upwelling, and emergence of the Isthmus of Panama isolated the Atlantic from the Indo-West Pacific (defined as the entire Indo-Pacific area, except the eastern Pacific). The mid-Atlantic and east Pacific barriers (wide stretches of water, difficult to cross by planktonic larvae) hindered dispersal of species across the entire width of each of the two oceans. Phylogenetic relationships among spe- cies of tropical marine taxa that occur in multiple biogeographic regions illuminate the importance of these phenomena in determining broad-scale historic patterns of divergence (Lessios et al. 1999, 2001, 2003; Colborn et al. 2001; Muss et al. 2001; Meyer 2003; Williams and Reid 2004; Duda and Kohn 2005; Meyer et al. 2005). The East Pacific Barrier (EPB), a 4,000?7,000 km stretch of deep water between the easternmost islands of the central Pacific and the offshore islands of the Americas, is perhaps the most formidable oceanic barrier to dispersal for tropical marine organisms. It has presumably been in place throughout the Cenozoic (Grigg and Hey 1992). Indo-West Pacific and eastern Pacific shallow-water benthic biotas are Communicated by Biology Editor Dr. Ruth Gates. T. F. Duda Jr (&) Department of Ecology and Evolutionary Biology and Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109, USA e-mail: tfduda@umich.edu T. F. Duda Jr  H. A. Lessios Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancon, Republic of Panama 123 Coral Reefs (2009) 28:651?659 DOI 10.1007/s00338-009-0485-9 nearly completely distinct, and few benthic and demersal tropical marine species have disjunct, trans-Pacific distri- butions (Briggs 1974). These distributions are often assumed to reflect relatively recent jump dispersals across this barrier that originated in the Indo-West Pacific (e.g., Briggs 1961, 1967; Emerson 1991, but see Robertson et al. 2004), but the direction of the initial dispersal event and of subsequent gene flow has only been extensively examined in fishes (Lessios and Robertson 2006). Among prosobranch gastropods, 33 species are known to occur in both the Indo-West Pacific and eastern Pacific (Emerson 1991). All 33 trans-Pacific species possess planktotrophic larvae, and their populations in the eastern Pacific are assumed to represent ephemeral sink popula- tions, which depend for their long-term persistence on recruitment from Indo-West Pacific populations (Emerson 1978, 1991; Emerson and Chaney 1995). Because most transpacific species [including gastropods (Emerson 1991)] have much wider distributions west of the EPB, the eastern Pacific populations are thought to have resulted from range expansion initiated in the Indo-West Pacific (Briggs 1974). However, reconstruction of phylogenetic relationships of members of the gastropod genus Conus revealed several historic breaches of the EPB that may have occurred in either direction during at least the past 10 million years (my) (Duda and Kohn 2005). Moreover, there is little reason for assuming that the initial introduction occurred in the same direction as subsequent gene flow. Phylogeo- graphic analyses of 20 trans-Pacific fish species showed that directionality of gene flow across this barrier is not as universal as had been assumed; while some fishes exhibit bidirectional gene flow, others show predominant patterns of migration in either westward or eastward directions (Lessios and Robertson 2006). These results challenge the long assumed view (Ekman 1953; Briggs 1974; Dana 1975; Vermeij 1978; Glynn et al. 1983; Rosenblatt and Waples 1986; Vermeij 1991) that initial colonization and sub- sequent gene flow across the EPB occur exclusively in an eastward direction and call for further investigations of patterns of genetic exchange of populations separated by this barrier. Understanding patterns of divergence of tropical marine organisms within biogeographic regions is also critical for making inferences about the origins of biodiversity. These patterns are best illuminated through comparison of the distributions of genotypes of populations of widespread species. For example, even though a number of unrelated taxa show concordant genetic breaks between Indian and Pacific populations, presumably caused by historical iso- lation of the two basins during times of low sea level stands (Benzie and Stoddart 1992; Mcmillan and Palumbi 1995; Lavery et al. 1996a; Miya and Nishida 1997; Williams and Benzie 1997, 1998; Duke et al. 1998; Benzie 1999; Duda and Palumbi 1999b; Lessios et al. 1999, 2001; Williams et al. 2002; Bay et al. 2004; Teske et al. 2005; Reid et al. 2006; Crandall et al. 2008), there is no equivalent con- cordance in breaks between the western and central Pacific areas of the Indo-West Pacific, or between localities within either of these areas. Vicariant events that could have influenced the genetic divergence between populations in the western and the central Pacific are not apparent in geologic history. Some species, including clams (Benzie and Williams 1997), sea urchins (Palumbi et al. 1997; Lessios et al. 1999, 2001), lancelets (Kon et al. 2006), and fishes (Winans 1980; Bernardi et al. 2001; Planes and Fauvelot 2002; Bay et al. 2004; Ravago-Gotanco and Jui- nio-Men?ez 2004), exhibit patterns of genetic differentiation between these two regions that suggest isolation by dis- tance. However, there is no obvious consistency among species in patterns of gene flow among populations. Other species, including gastropods (Crandall et al. 2008), crus- taceans (Williams et al. 2002), and echinoderms (Lessios et al. 2001), show evidence of limited structure between these areas. The lack of concordance in the distributions of genotypes and patterns of gene flow of species in the wes- tern and central Pacific implies that differences in species traits, possibly related to life history, dispersal ability, or other aspects of their biology, or unique demographic histories have affected their current genetic population structures. Three Conus species currently exhibit trans-Pacific dis- tributions: C. chaldaeus, C. ebraeus, and C. tessulatus (Emerson 1991). In the Indo-West Pacific these species range from the eastern shores of Africa to the easternmost islands of the central Pacific, although C. chaldaeus and C. tessulatus have not been reported from Easter Island, and C. tessulatus does not occur in the Hawaiian Archipelago (Ro?ckel et al. 1995). These three species also occur at off- shore islands in the eastern Pacific, including Clipperton Atoll (all three species), Isla del Coco (all three species), the Galapagos Islands (C. chaldaeus and C. ebraeus), the Revillagigedo Islands (C. tessulatus only), as well as at several nearshore islands off of the coast of Central America (Emerson 1991). The phylogeography of one of these three trans-Pacific Conus species, C. ebraeus, was examined to interpret levels of differentiation and patterns of gene flow of this species in the tropical Pacific. The range of C. ebraeus is summarized in Fig. 1 based on data presented in Ro?ckel et al. (Ro?ckel et al. 1995). Planktotrophic larvae of C. ebraeus have a minimum pelagic period of 25?27 days (Kohn and Perron 1994) and thus have the potential to dis- perse relatively large distances. The following questions were addressed: Do populations of C. ebraeus show evi- dence of genetic subdivision within the western and central Pacific? Are populations of C. ebraeus in the eastern Pacific and the Indo-West Pacific genetically differentiated from 652 Coral Reefs (2009) 28:651?659 123 each other? Is gene flow between eastern Pacific and Indo- West Pacific populations occurring and, if so, is it direc- tionally biased? Methods Sequences of a fragment of the mitochondrial cytochrome oxidase subunit I (COI) gene were obtained from 92 indi- viduals of C. ebraeus from locations spread through the tropical Pacific (Fig. 1). Although C. ebraeus occurs in the eastern Pacific, it is not particularly abundant in some locations, so only two specimens were obtained from islands in the Gulf of Chiriqu?? in western Panama and 10 specimens from Clipperton Island. Tissues were preserved in 75?95% ethanol. All specimens that were specifically collected for this work were deposited in the collections of the Mollusk Division of the University of Michigan Museum of Zoology (UMMZ). Tissues from specimens from Enawetak and Clipperton Island were acquired from collections of the UMMZ and the Santa Barbara Museum of Natural History, respectively. While most specimens were from recent collections and were preserved and stored in 75?95% ethanol, specimens from Enawetak were collected in 1960 and initially preserved in propylene phenoxetol. Previously unpublished sequence data were deposited in GenBank under accession numbers EF547559-EF547649. DNA was extracted from approximately 25 mg of foot tissue using methods described in Duda and Palumbi (1999a), or with the E.Z.N.A.TM Mollusc DNA Kit (Omega Bio-Tek, Doraville, Georgia, USA). Tissues from speci- mens from Enawetak that were originally preserved in propylene phenoxetol had a gelatin-like consistency; extractions of these tissues were also performed with the Omega Bio-Tek kit; amplifications from the resultant DNAs from these samples were by and large successful. Amplifi- cation of a fragment of the mitochondrial COI gene was accomplished using universal COI primers LCO1490 and HCO2198 (Folmer et al. 1994). Unincorporated dNTPs and primers were removed from amplified sequences with the Qiaquick PCR Purification Kit (Qiagen, Valencia, California, USA). Approximately 611 bases of the ampli- fied fragments were sequenced in both directions. Chromatograms were analyzed, and sequences were aligned to a sequence previously determined from an individual of C. ebraeus from American Samoa (GenBank accession number AY588175, Duda and Rola?n 2005) with Sequen- cher 4.6 (Gene Codes Corporation, Ann Arbor, Michigan, USA). The most appropriate model for nucleotide substitution was determined with Modeltest 3.7 (Posada and Crandall 1998). Sequences were inspected to identify haplotypes that are shared among individuals with MacClade 4.0 (Maddison and Maddison 2000). To examine the distribution of haplotypes among populations, a haplotype network was constructed with TCS version 1.21 (Clement et al. 2000). Arlequin version 2.0 was used (Schneider et al. 2000) to calculate haplotype frequencies, haplotype diversity statis- tics, Analysis of Molecular Variance (AMOVA) (Excoffier et al. 1992), and pairwise UST statistics using Tamura and Nei (1993) distances. Although hierarchical likelihood ratio tests in Modeltest selected the HKY model (Hasegawa et al. 1985) as the most appropriate model for nucleotide substi- tution, this model is not available in Arlequin and so Tamura-Nei distances were used; HKY and Tamura-Nei distances differ at most at the fifth decimal place. About 10,010 permutations were used to assess the degree to which obtained estimates were different than those obtained from a random assignment of haplotypes to populations. Arlequin was also used to examine mismatch distributions (Rogers and Harpending 1992; Rogers 1995) to investigate the demographic history of populations. To distinguish whether genetic similarity between pop- ulations from the eastern Pacific and from the rest of the Pacific is due to recent separation or to recurrent gene flow after initial separation, and to determine the direction of gene flow, a Bayesian procedure, developed by Nielsen and Wakeley (2001); Hey and Nielsen (2004) was employed. This isolation?migration (IM) method uses coalescence to estimate effective population size of ancestral and daughter Fig. 1 Map of the Indian and Pacific Oceans with the range of Conus ebraeus (delimited by thick lines), collection locations and sample sizes (n) Coral Reefs (2009) 28:651?659 653 123 populations, the time since their initial separation (i.e., the time since vicariance or the last massive invasion), and the migration rate in each direction. Specifically, the algorithm estimates the time of separation t (number of generations, scaled by mutation rate, l) between populations, h = Nel (where Ne is the effective population size of the ancestral and the two daughter populations, each estimated sepa- rately), and the scaled migration rate m = m/l in each direction. Analyses were implemented by pooling sequen- ces from the eastern Pacific in one sample, those from the rest of the Pacific in another, using the HKY (Hasegawa et al. 1985) model of nucleotide substitutions, and assuming constant population size. From the results of IM, twice the number of females moving through the barrier per genera- tion (M) was calculated as M = 2Nemf = hm/2 (where mf is the female migration rate). To perform the IM analysis, wide limits for prior values for each parameter were selected, then multiple runs were carried out, starting from simple unheated runs with burn- in intervals of 105 steps, and continuing by increasing the number of steps, the burn-in time, and the complexity of the heating scheme until complete (or nearly complete) posterior likelihood curves were obtained for each param- eter. Runs were initiated with different random seeds. The final run, from which estimates are shown here, involved geometric heating of 20 Markov chains, a burn-in period of 5 9 106 steps, continuous calculations of 2.85 9 108 steps beyond the burn-in, and a minimum effective sample size (ESS) of 907. Results Sequences and haplotypes Among the 92 individuals sequenced, 43 unique COI haplotypes were detected. These sequences differed by a maximum of 12 out of a total of 61 variable sites. Of these, 31 haplotypes were unique to single individuals, another occurred in more than one individual but was unique to a single location (haplotype 38, Fig. 2) and the remaining 11 occurred in more than one individual from more than one location (haplotypes 1?11). Haplotype diversity in western and central Pacific sites with N [ 6 ranged from 0.93 to 1. Clipperton in the eastern Pacific and combined eastern Pacific sites had lower haplotype diversity (Table 1). The haplotype network constructed from the COI sequences (Fig. 2) reveals that the most common, presum- ably ancestral, haplotype (no. 3) occurred at all locations except for Guam and Panama. The distribution of this haplotype thus extends from the Philippines and Okinawa, all the way to the Clipperton Atoll, a distance of approxi- mately 13,500 km. Many other haplotypes in the western Pacific differ by one or two mutations from this common haplotype. Several other haplotypes differ by more than four sites from the ancestral haplotype. Analysis of molecular variation within and between regions AMOVA comparison of genetic variation within and between the eastern Pacific samples versus the western and central Pacific ones revealed that nearly 74% of the vari- ance in COI was within localities, and only 1% between localities within regions (Table 2). Approximately one- fourth (25.2%) of the variance was between regions. Pairwise F-statistics As is to be expected given the AMOVA results, pairwise UST values among localities show evidence of significant genetic separation between eastern Pacific and western ? central Pacific samples (Table 3). Within the western and central Pacific, samples from each site show no evidence of struc- ture, and pairwise UST values are considerably smaller than those observed between western ? central Pacific site and the Clipperton Island samples; none of the comparisons within the western ? central Pacific are significantly dif- ferent from zero (Table 3). Historical demography of populations The mismatch distribution of haplotypes from the entire western and central Pacific was not significantly different Fig. 2 Statistical parsimony (Templeton et al. 1992) network of COI haplotypes joining 92 individuals of Conus ebraeus from the tropical Pacific at the 95% confidence level. The ancestral haplotype according to ??outgroup weight?? (Castelloe and Templeton 1994) is depicted as a rectangle. Numbers inside the shapes are designating individual haplotypes. The area of each shape is proportional to the frequency of each haplotype (haplotype 1: n = 6, 2:4, 3:19, 4:4, 5:3, 6:5, 7:4, 8:4, 9:2, 10:2, 11:5 and 38:3). Hypothetical haplotypes are indicated with empty small circles. Localities are shown in the legend 654 Coral Reefs (2009) 28:651?659 123 from the unimodal distribution expected from recent expansion (P = 0.249) (Fig. 3). Similar results were also obtained when samples from sites in the western and central Pacific were examined individually by location. Estimates of initial and current h following population expansion (h0 and h1, respectively, where h = 2Nel, Ne is the effective population size and l is the mutation rate) of the combined western and central Pacific sites are h0 = 2.752 (95% confidence interval = 0.000?8.400) and h1 = 1062.5 (95% confidence interval = 20.994?7586.3). The estimated value of s (the number of generations scaled by mutation rate) for the combined data from samples in the western and central Pacific is 1.399 (95% confidence interval: 0.352?5.500). On the other hand, the mismatch distribution for data from the two sites in the eastern Pacific is bimodal, and the least squares fit is significantly different than one determined for a simulated recently expanded population (P = 0.005). Nonetheless, because the sample size from this region is small this result is not robust. Table 1 Sample sizes and haplotype diversity of Conus ebraeus from several sites in the Pacific Standard errors are indicated in parentheses Number of individuals Number of haplotypes Haplotype diversity (SE) Eastern Pacific Clipperton 10 4 0.778 (0.091) Panama 2 1 0.000 (0.000) Combined 12 4 0.712 (0.105) Central and western Pacific Hawaii 17 13 0.963 (0.033) American Samoa 20 14 0.947 (0.034) Enawetak 9 9 1.000 (0.052) Guam 10 9 0.978 (0.054) Philippines 6 2 0.333 (0.215) Okinawa 18 12 0.935 (0.041) Combined 80 41 0.942 (0.018) Table 2 Analysis of molecular variance (AMOVA) and U-statistics of populations of Conus ebraeus from the eastern Pacific and western ? central Pacific Category Observed partition Variance % explained U-statistics P df Among regions 0.631 25.2 UCT = 0.252 \0.00001 1 Among populations within regions 0.026 1.0 USC = 0.014 0.244 6 Within populations 1.845 73.7 UST = 0.263 \0.00001 84 Table 3 Pairwise UST values for all populations of Conus ebraeus in the tropical Pacific with n [ 5 Eastern Pacific Central and western Pacific Clipperton Hawaii American Samoa Enawetak Guam Philippines Okinawa Eastern Pacific Clipperton ? Central and western Pacific Hawaii 0.189*** ? American Samoa 0.210**** -0.025 ? Enawetak 0.194** -0.021 -0.009 ? Guam 0.157** -0.019 0.006 -0.015 ? Philippines 0.248* -0.011 -0.010 -0.047 0.039 ? Okinawa 0.112* 0.017 0.034 0.039 -0.021 0.085 ? Probabilities that observed UST values deviate from a null hypothesis of no difference between populations were determined from the proportion of 10,100 permutations of haplotypes between populations that gave UST values greater than or equal to the observed UST (* P \ 0.05, ** P \ 0.01, *** P \ 0.005, **** P \ 0.001) Coral Reefs (2009) 28:651?659 655 123 Despite IM run durations longer than 1 year, it proved impossible to obtain a distinct inflection point in the pos- terior probability density curve of h for the populations from the western and central Pacific, indicating that the data from this single locus did not contain the information necessary for the estimation of this parameter. The curve of posterior probability density for this parameter rose from a low value to a plateau, such that all estimates of h greater than 2,000 had the same approximate probability, and so it is reasonable to consider 2,000 as a minimum estimate of h (see Hey 2005). Convergence was reached for all other parameters. Based on these results, h for combined data from the western and central Pacific (hW?CP [ 2000) was considerably larger than estimates of h for the eastern Pacific [hEP = 0.045 (highest posterior probability interval HPPI): 0.045?1.04)] and of the ancestral population (hA = 11.11, HPPI: 0.027?69.09). These results were consistent with those from analyses of mismatch distribu- tions in which the population from the western and central Pacific appears to have undergone recent population expansion while the population from the eastern Pacific has not. While the scaled probability of migration into the eastern Pacific was higher (mEP = 40.2,HPPI: 0.25?394.25) than that into the western and central Pacific (mW?CP = 0.05, HPPI: 0.05?8.68), the number of female propagules (M = 2Nem = hm/2) that the western and central Pacific has received (MW?CP [ 50.0) was much higher than the number that the eastern Pacific has received (MEP = 0.92) if the estimation of hW?CP is reasonable. Also, the proportion of time during the IM run that MW?CP was greater than MEP was 0.99. The estimated scaled time of divergence of populations (t = g/u, g is number of generations) was 0.315 (HPPI: 0.075?3.375). Discussion Connectivity among western and central Pacific populations Even though all samples of C. ebraeus in the western and central Pacific included haplotypes unique to particular sites, the majority of these haplotypes were only a few mutational steps removed from the most common haplo- type. Many other haplotypes were shared among populations (Fig. 2). Thus, COI in C. ebraeus indicates high levels of on-going gene flow among populations west of the EPB, including those from Hawaii, or else that C. ebraeus recently expanded in these regions. Pairwise estimates of UST between populations in this region also reveal an overall lack of structure among these populations (Table 3). No UST value between any pair of populations from the western and central Pacific was significant. Analysis of molecular variance further demonstrates that the majority of the genetic variation occurs within popu- lations and only approximately 1% of the variation is partitioned among populations within regions when con- sidering populations from the western ? central and eastern Pacific (Table 2). The genetic structure of C. ebraeus in the western and central Pacific perhaps best resembles that of several other Indo-West Pacific species: the nerite gastropods Nerita albicilla and N. plicata (Crandall et al. 2008) and the sea urchins Tripneustes gratilla (Lessios et al. 2003) and Diadema savignyi (Lessios et al. 2001). As in C. ebraeus, several mitochondrial haplotypes are shared among popu- lations throughout the range of each species. Pairwise estimates of UST are generally low, though in Tripneustes some are significant. Larvae of Diadema and Tripnuestes have planktonic phases that last from one to three months, and so, similar to C. ebraeus, they may achieve high rates of gene flow due to great dispersal abilities of their planktonic larval stage. Fig. 3 Mismatch distributions of COI haplotypes of populations of Conus ebraeus from a the western and central Pacific and b the eastern Pacific. Curves depicting frequency distributions of pairwise sequence differences simulated under a model of population expan- sion are illustrated for each set of haplotypes 656 Coral Reefs (2009) 28:651?659 123 Results from analysis of F-statistics are incapable of distinguishing between low levels of gene flow among recently derived populations and higher levels of gene flow among long separated populations. The mismatch distribu- tion of combined haplotype sequences of western and central Pacific populations of C. ebraeus (Fig. 3) is con- sistent with a model of recent expansion within this region. COI sequences of a pair of transisthmian Conus, C. gladiator and C. mus, given by Duda and Rola?n (2005) and an esti- mated time of divergence of these species at 6.9 my (Duda and Kohn 2005) provides a mutation rate of 3.7 substitutions per million year for the amplified fragment of COI. Based on this rate and the estimated value of s, expansion of western and central Pacific populations presumably took place dur- ing the last 190 thousand years; the 95% confidence interval for the timing of the expansion is 50?740 thousand years. Accordingly, fossils of C. ebraeus are known from Pleis- tocene deposits in the Seychelles (Braithwaite et al. 1973), Australia (Kohn 1997), and Hawaii (Kosuge 1969) but have not been reported from earlier deposits. The coconut crab, Birgus latro (Lavery et al. 1996b), and the sea urchin T. gratilla (Lessios et al. 2003) also show similar mismatch distributions as those of C. ebraeus and apparently also recently expanded in the western Pacific during the Pleis- tocene. Based on a variety of Bayesian analyses, the nerites N. albicilla and N. plicata also appear to have recently expanded in the Pacific during the Pleistocene (Crandall et al. 2008). Few other phylogeographic studies have spe- cifically examined the demographic histories of species in the western and central Pacific, but gene trees of sev- eral, including some echinoderms, such as D. savignyi, D. setosum and D. paucispinum (Lessios et al. 2001) and a fish (Chlorurus sordidus, Bay et al. 2004), exhibit a star-like pattern that is suggestive of recent population expansion. Thus, the limited degree of genetic differentiation of popu- lations of these species may simply reflect recent expansion, rather than current levels of gene flow and this pattern appears to be shared by many other western and central Pacific marine taxa. History and origins of populations in the eastern Pacific Trans-Pacific distributions of tropical prosobranch gastro- pod species that are widely distributed and abundant in the Indo-West Pacific are often assumed to indicate relatively recent range expansions from these areas into the eastern Pacific (e.g., Emerson 1991). However, if speciation is often peripatric (Mayr 1970), there is also the possibility that a new species would arise in the margins of the ancestral distribution, then spread into the center. In C. ebraeus the ancestral haplotype is found in the western, central and eastern Pacific, so it provides no information regarding the direction of invasion across the East Pacific Barrier. In 13 out of 20 trans-Pacific fishes examined by Lessios and Robertson (2006) source populations were not obvious for the same reason. Patterns of gene flow between western ? central Pacific and eastern Pacific populations The results of the IM analysis are tentative, not only because it proved impossible to obtain a good estimate of effective population size for the western ? central Pacific, but also because a single locus does not necessarily provide good estimates of population history. Nevertheless, the estimate that more larvae cross the EPB in a westerly direction and contribute genes to populations in the western and central Pacific is similar to results recently obtained for a variety of fishes (Lessios and Robertson 2006). Out of 15 comparisons of trans-Pacific populations of fishes across the EPB in which directionality of migration could be deter- mined, Lessios and Robertson (2006) found that 11 showed a higher rate of gene flow westward. They attributed this trend to the higher probability that migrants across this large oceanic stretch would successfully mate and leave their genes behind when they arrived at the denser and more widespread populations in the west. The time of separation between eastern and western ? central Pacific populations of C. ebraeus estimated by IM, when calibrated with the same substitution rate of Conus as the estimates obtained from the mismatch analysis, is approximately 84 thousand years. If this estimate is correct, there was a large pulse of migration, obliterating any genetic differences that might have existed between populations within the last millen- nium. Given that the sample from the eastern Pacific is composed almost entirely of C. ebraeus collected at the Clipperton Atoll, the westernmost island in the eastern Pacific, the fauna of which is a mixture of eastern and central Pacific species (Emerson 1994; Robertson and Allen 1996), this scenario is not entirely implausible. Sample sizes, geographic coverage and single locus analysis Because of the difficulty of obtaining C. ebraeus from many places, sample sizes from some localities are small, and geographic coverage, albeit widespread within the Pacific, is not dense. Nonetheless, the inclusion of COI data from additional individuals or localities would not be likely to produce results that contradict the main interpretations concerning the lack of structure within the western ? cen- tral Pacific and distinctiveness of the eastern Pacific population even if inferences of demographic histories are more tentative. For example, despite low sample sizes from some sites, pairwise UST values estimated between sites in the western and central Pacific are consistently not Coral Reefs (2009) 28:651?659 657 123 significant, whereas those estimated between sites in the western ? central Pacific and eastern Pacific are consis- tently significant. These interpretations are also based solely on examination of a single mitochondrial gene. Presumably variation in the marker is effectively neutral, but if this were not the case (e.g., if a recent selective sweep of mitochon- drial DNA had occurred), then the inferences on demographic histories would be in error. Examination of additional loci would be useful in evaluating these interpretations. The phylogeography of C. ebraeus contrasts greatly with that of another gastropod, Astralium rhodostomum (Meyer et al. 2005). Like C. ebraeus, A. rhodostomum has a wide distribution (from Thailand to Polynesia) and possesses a planktonic larva. But unlike the planktonic larvae of Conus, those of Astralium are unable to feed, and thus spend less time in the plankton. Possibly due to this difference, A. rhodostomum displays a high degree of fine-scale ende- mism, with 30 separate clades, many of them geographically isolated from each other. Meyer et al. suggest that such ??species?? that are morphologically uniform but genetically differentiated between archipelagos are common among gastropods. C. ebraeus definitely does not fit this pattern, and its phylogeography is more similar to that of other marine taxa than it is to Astralium. Thus, each marine spe- cies, independently of its phylogenetic affinities, has its own unique history and its own biological characteristics that can affect its phylogeographic history. Many more studies of widespread species will be needed before the factors that contribute to modern-day patterns can be elucidated. Acknowledgments Dan Lindstrom, Laura Geyer, Alan Kohn, Steve Vollmer, Kirstie Kaiser, and Hank Chaney assisted in obtaining or aided in access to specimens. Don Barclay and family greatly assisted in fieldwork and collections in American Samoa. Mike Hadfield and members of the Kewalo Marine Lab (University of Hawaii) facilitated collections on Oahu. The crew of the R/V Urraca? (STRI) assisted with obtaining specimens from Panama. We are extremely grateful for access to specimens from the Invertebrate Zoology collections at the Santa Barbara Museum of Natural History. We also appreciate comments on this manuscript from Diarmaid O? Foighil, Evan Bra- swell and several anonymous reviewers. Aspects of this work were initiated while TFD was a Tupper Fellow at STRI and completed with support from NSF (0718370) and start-up funds from the University of Michigan Museum of Zoology and Department of Ecology and Evolutionary Biology. References Bay LK, Choat JH, van Herwerden L, Robertson DR (2004) High genetic diversities and complex genetic structure in an Indo- Pacific tropical reef fish (Chlorurus sordidus): evidence of an unstable evolutionary past? Mar Biol 144:757?767 Benzie JAH (1999) Genetic structure of coral reef organisms: ghosts of dispersal past. Am Zool 39:131?145 Benzie JAH, Stoddart JA (1992) Genetic structure of crown-of-thorns starfish (Acanthaster planci) in Australia. Mar Biol 112:631?639 Benzie JAH, Williams ST (1997) Genetic structure of giant clam (Tridacna maxima) populations in the west Pacific is not consistent with dispersal by present-day ocean currents. Evolution 51:768?783 Bernardi G, Holbrook SJ, Schmitt RJ (2001) Gene flow at three spatial scales in a coral reef fish, the three-spot dascyllus, Dascyllus trimaculatus. Mar Biol 138:457?465 Braithwaite CJ, Taylor JD, Kennedy WJ (1973) Evolution of an atoll?depositional and erosional history of Aldabra. Phil Trans R Soc Lond B 266:307?340 Briggs JC (1961) East Pacific Barrier and distribution of marine shore fishes. Evolution 15:545?554 Briggs J (1967) Relationship of the tropical shelf regions. Stud Trop Oceanogr 5:569?578 Briggs JC (1974) Marine zoogeography. McGraw-Hill, New York Castelloe J, Templeton AR (1994) Root probabilities for intraspecific gene trees under neutral coalescent theory. Mol Phylogenet and Evol 3:102?113 Clement M, Posada D, Crandall KA (2000) TCS: a computer program to estimate gene genealogies. Mol Ecol 9:1657?1659 Colborn J, Crabtree RE, Shaklee JB, Pfeiler E, Bowen BW (2001) The evolutionary enigma of bonefishes (Albula spp.): cryptic species and ancient separations in a globally distributed shore- fish. Evolution 55:807?820 Crandall ED, Frey MA, Grosberg RK, Barber PH (2008) Contrasting demographic history and phylogeographical patterns in two Indo-Pacific gastropods. Mol Ecol 17:611?626 Dana TF (1975) Development of contemporary eastern Pacific coral reefs. Mar Biol 33:355?374 Duda TF Jr, Kohn AJ (2005) Species-level phylogeography and evolutionary history of the hyperdiverse marine gastropod genus Conus. Mol Phylogenet and Evol 34:257?272 Duda TF Jr, Palumbi SR (1999a) Developmental shifts and species selection in gastropods. Proc Natl Acad Sci USA 96:10272?10277 Duda TF Jr, Palumbi SR (1999b) Population structure of the black tiger prawn, Penaeus monodon, among western Indian Ocean and western Pacific populations. Mar Biol 134:705?710 Duda TF Jr, Rola?n E (2005) Explosive radiation of Cape Verde Conus, a marine species flock. Mol Ecol 14:267?272 Duke NC, Benzie JAH, Goodall JA, Ballment ER (1998) Genetic structure and evolution of species in the mangrove genus Avicennia (Avicenniaceae) in the Indo-West Pacific. Evolution 52:1612?1626 Ekman S (1953) Zoogeography of the sea. Sidgwick and Jackson, London Emerson WK (1978) Mollusks with Indo-Pacific faunal affinities in eastern Pacific Ocean. Nautilus 92:91?96 Emerson WK (1991) 1st records for Cymatium mundum (Gould) in the eastern Pacific Ocean, with comments on the zoogeography of the tropical trans-Pacific tonnacean and non-tonnacean prosobranch gastropods with Indo-Pacific faunal affinities in West American waters. Nautilus 105:62?80 Emerson WK (1994) A zoogeographic summary of the marine mollusks of Clipperton Island (tropical eastern Pacific Ocean). The Festivus (San Diego Shell Club) 26:62?71 Emerson WK, Chaney HW (1995) A zoogeographic review of the Cypraeidae (Mollusca, Gastropoda) occurring in the eastern Pacific Ocean. Veliger 38:8?21 Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplo- types?application to human mitochondrial-DNA restriction data. Genetics 131:479?491 Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol 3:294?299 658 Coral Reefs (2009) 28:651?659 123 Glynn PW, Wellington GM, Wells JW (1983) Corals and coral reefs of the Gala?pagos Islands. University of California Press, Berkeley Grigg RW, Hey R (1992) Paleoceanography of the tropical eastern Pacific Ocean. Science 255:172?178 Hasegawa M, Kishino H, Yano TA (1985) Dating of the human ape splitting by a molecular clock of mitochondrial-DNA. J Mol Evol 22:160?174 Hey J (2005) On the number of New World founders: a population genetic portrait of the peopling of the Americas. Plos Biol 3:965?975 Hey J, Nielsen R (2004) Multilocus methods for estimating popula- tion sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persim- ilis. Genetics 167:747?760 Kohn AJ (1997) Ecological and biogeographic attributes of Conus on the Indian Ocean?s southernmost coral reefs. In: Wells F (ed) The marine flora and fauna of the Houtman Abrolhos Islands, Western Australia, Proceedings of the seventh international marine biological workshop. Western Australia museum, Perth, pp 113?131 Kohn AJ, Perron FE (1994) Life history and biogeography: patterns in Conus. Clarendon Press, Oxford Kon T, Nohara M, Nishida M, Sterrer W, Nishikawa T (2006) Hidden ancient diversification in the circumtropical lancelet Asymmetron lucayanum complex. Mar Biol 149:875?883 Kosuge S (1969) Fossil mollusks of Oahu, Hawaii Islands. Bull Natl Sci Mus Tokyo 23:783?794 Lavery S, Moritz C, Fielder DR (1996a) Indo-Pacific population structure and evolutionary history of the coconut crab Birgus latro. Mol Ecol 5:557?570 Lavery S, Moritz C, Fielder DR (1996b) Genetic patterns suggest exponential population growth in a declining species. Mol Biol Evol 13:1106?1113 Lessios HA, Robertson DR (2006) Crossing the impassable: genetic connections in 20 reef fishes across the eastern Pacific barrier. Proc R Soc Lond B Biol Sci 273:2201?2208 Lessios HA, Kessing BD, Robertson DR, Paulay G (1999) Phyloge- ography of the pantropical sea urchin Eucidaris in relation to land barriers and ocean currents. Evolution 53:806?817 Lessios HA, Kessing BD, Pearse JS (2001) Population structure and speciation in tropical seas: global phylogeography of the sea urchin Diadema. Evolution 55:955?975 Lessios HA, Kane J, Robertson DR (2003) Phylogeography of the pantropical sea urchin Tripneustes: contrasting patterns of population structure between oceans. Evolution 57:2026?2036 Maddison DR, Maddison WP (2000) MacClade 4: analysis of phylogeny and character evolution Version 4.0. Sinauer Associ- ates, Sunderland, MA Mayr E (1970) Populations, species, and evolution; an abridgment of animal species and evolution. Belknap Press of Harvard University Press, Cambridge, MA Mcmillan WO, Palumbi SR (1995) Concordant evolutionary patterns among Indo-West Pacific butterfly fishes. Proc R Soc Lond B Biol Sci 260:229?236 Meyer CP (2003) Molecular systematics of cowries (Gastropoda: Cypraeidae) and diversification patterns in the tropics. Biol J Linn Soc 79:401?459 Meyer CP, Geller JB, Paulay G (2005) Fine scale endemism on coral reefs: archipelagic differentiation in turbinid gastropods. Evolu- tion 59:113?125 Miya M, Nishida M (1997) Speciation in the open ocean. Nature 389:803?804 Muss A, Robertson DR, Stepien CA, Wirtz P, Bowen BW (2001) Phylogeography of Ophioblennius: the role of ocean currents and geography in reef fish evolution. Evolution 55:561?572 Nielsen R, Wakeley J (2001) Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics 158: 885?896 Palumbi SR, Grabowsky G, Duda T, Geyer L, Tachino N (1997) Speciation and population genetic structure in tropical Pacific sea urchins. Evolution 51:1506?1517 Planes S, Fauvelot C (2002) Isolation by distance and vicariance drive genetic structure of a coral reef fish in the Pacific Ocean. Evolution 56:378?399 Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817?818 Ravago-Gotanco RG, Juinio-Men?ez MA (2004) Population genetic structure of the milkfish, Chanos chanos, based on PCR-RFLP analysis of the mitochondrial control region. Mar Biol 145: 789?801 Reid DG, Lal K, Mackenzie-Dodds J, Kaligis F, Littlewood DTJ, Williams ST (2006) Comparative phylogeography and species boundaries in Echinolittorina snails in the central Indo-West Pacific. J Biogeogr 33:990?1006 Robertson DR, Allen GR (1996) Zoogeography of the shorefish fauna of Clipperton Atoll. Coral Reefs 15:121?131 Robertson DR, Grove JS, McCosker JE (2004) Tropical transpacific shore fishes. Pac Sci 58:507?565 Ro?ckel D, Korn W, Kohn AJ (1995) Manual of the living Conidae. Verlag Christa Hemmen, Wiesbaden, Germany Rogers AR (1995) Genetic evidence for a Pleistocene population explosion. Evolution 49:608?615 Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol 9:552?569 Rosenblatt RH, Waples RS (1986) A genetic comparison of allopatric populations of shore fish species from the eastern and central Pacific Ocean?dispersal or vicariance. Copeia 1986:275?284 Schneider S, Roessli D, Excoffier L (2000) Arlequin ver 2.0. A software for population genetics data analysis. Genetics and Biometry Laboratory, University of Geneva, Geneva Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial-DNA in humans and chimpanzees. Mol Biol Evol 10:512?526 Templeton AR, Crandall KA, Sing CF (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA-sequence data. 3. Cladogram estimation. Genetics 132:619?633 Teske PR, Hamilton H, Palsboll PJ, Choo CK, Gabr H, Lourie SA, Santos M, Sreepada A, Cherry MI, Matthee CA (2005) Molecular evidence for long-distance colonization in an Indo- Pacific seahorse lineage. Mar Ecol Progr Ser 286:249?260 Vermeij GJ (1978) Biogeography and adaptation: patterns of marine life. Harvard University Press, Cambridge, MA Vermeij GJ (1991) When biotas meet?understanding biotic inter- change. Science 253:1099?1104 Williams ST, Benzie JAH (1997) Indo-West Pacific patterns of genetic differentiation in the high-dispersal starfish Linckia laevigata. Mol Ecol 6:559?573 Williams ST, Benzie JAH (1998) Evidence of a biogeographic break between populations of a high dispersal starfish: congruent regions within the Indo-West Pacific defined by color morphs, mtDNA, and allozyme data. Evolution 52:87?99 Williams ST, Reid DG (2004) Speciation and diversity on tropical rocky shores: a global phylogeny of snails of the genus Echinolittorina. Evolution 58:2227?2251 Williams ST, Jara J, Gomez E, Knowlton N (2002) The marine Indo- West Pacific break: contrasting the resolving power of mito- chondrial and nuclear genes. Integr Comp Biol 42:941?952 Winans GA (1980) Geographic variation in the milkfish Chanos chanos. 1. Biochemical evidence. Evolution 34:558?574 Coral Reefs (2009) 28:651?659 659 123