Divergence in Proteins, Mitochondrial DNA, and Reproductive Compatibility Across the Isthmus of Panama BUSifl ? STOR Nancy Knowlton; Lee A. Weight; Luis Anibal Solorzano; DeEtta K. Mills; Eldredge Bermingham &%g?cg, New Series, Vol. 260, No. 5114 (Jun. 11,1993), 1629-1632. Stable URL: http://links.jstor.org/sici?sici=0036-8075%2819930611%293%3A260%3A5114%3C1629%3ADIPMDA%3E2.0.CO%3B2-%23 Science is currently published by American Association for the Advancement of Science. Your use of the JSTOR archive indicates your acceptance of JSTOR' s Terms and Conditions of Use, available at http://www.jstor.org/about/terms.html. JSTOR's Terms and Conditions of Use provides, in part, that unless you have obtained prior permission, you may not download an entire issue of a journal or multiple copies of articles, and you may use content in the JSTOR archive only for your personal, non-commercial use. Please contact the publisher regarding any further use of this work. Publisher contact information may be obtained at http://www.jstor.org/journals/aaas.html. Each copy of any part of a JSTOR transmission must contain the same copyright notice that appears on the screen or printed page of such transmission. For more information on JSTOR contact j stor-info@umich.edu. ?2003 JSTOR http://www.j stor.org/ TueNov 18 14:35:27 2003 mm? ried out on the basis of only those species known to reach sizes >5 mm in any linear dimension, 12. G. Rosenberg, Am. Malacol. Bull., in press. More than 1000 publications on western Atlantic mol- lusks were consulted in the compilation of this data base. 13. W. D. Allmon, PalaiosB, 183 (1993). 14. We estimate that the total shelled molluscan fauna of the Pinecrest is about 1050 species. We ob- tained this number by taking the estimated 801 Pinecrest gastropods and bivalves and adding 20% for species yet to be discovered and 5% for two less diverse classes, the chitons and scapho- pods (29). This number is the same as a widely cited estimate for the Pinecrest (9), which listed 300 species, including 170 gastropods, and gave a total of about 1000 species. 15. A. A. Olsson, in Miami Geological Society Fieldtrip Guidebook, R. D. Perkins, compiler (Miami, FL 1968), p. 75. 16. E. J. Petuch, Proc. Acad. Nat. Sci. Philadelphia 134, 12 (1982). 17. In 1977, the Florida fauna was tallied at 1085 gastropods and bivalves (29); here we have tallied 1147 (827 gastropods and 320 bivalves), an increase of almost 6%. 18. E. J. Petuch, Neogene History of Tropical Ameri- can Mollusks (Coastal Education and Research Foundation, Charlottesville, VA, 1988). 19. J. K. Reed and P. M. Mikkelsen, Bull. Mar. Sci. 40, 99 (1987); W. G. Lyons, Fla. Mar. Res. Inst. Publ. 47(1989). 20. S. M. Stanley, in Causes of Evolution, a Paleontolog- icalPerspective, R. M. Ross and W. D. Allmon, Eds. (Univ. of Chicago Press, Chicago, 1990), pp. 103- 127. 21. K. W. Flessa ef a/., in Patterns and Processes in the History of Life, D. M. Raup and D. Jablonski, Eds. (Springer-Verlag, Berlin, 1986) pp. 232-257. 22. J B. C. Jackson, P. Jung, A. G. Coates, L. S Collins, Science 260, 1624 (1993). 23. Eastern Pacific data from (4) as revised by C. Skoglund, Festivus (suppl.) 24, 1 (1992). 24. T. M. Cronin, Ouat. Sci. Rev. 10, 175 (1991). 25. L. W. Ward, R. H. Bailey, J. G. Carter, in The Geology of the Carolinas, J. W. Morton and V. A. Zullo, Eds. (Univ. of Tennessee Press, Knoxville, 1991), pp. 274-289. 26. S. M. Stanley, Paleobiology 12, 89 (1986); W. D. Allmon, Oxford Surv. Evol. Biol. 8, 219 (1992). 27 B, W. Blackwelder, Palaeogeogr. Palaeoclimatol. Palaeoecol. 34, 87 (1981); T. M. Cronin, Geol. Soc. Am. Bull. 92, 812 (1981); H. J. Dowsett and T. M. Cronin, Geology 18, 435 (1990). 28. W, D. Allmon, Palaeogeogr. Palaeoclimatol. Palaeoecol. 92, 41 (1992), and references therein. 29. D. Nicol, Nautilus 91, 4 (1977). 30. R. W. Portell, K. S. Schindler, G. M. Morgan, in "The Plio-Pleistocene stratigraphy and paleontol- ogy of southern Florida," T. M. Scott and W. D. Allmon, Eds., Fla. Geol. Surv. Spec. Publ. 36 (1992), pp. 181-194. 31. R. W. Portell, K. S. Schindler, D. S. Jones, Tulane Stud. Geol. Paleontol., in press. 32. We thank A. Collazos, K. Ketcher, and S. Schellen- berg for assistance in data analysis and T. Cronin, J. Jackson, D. Jones, and L. Ward for comments on earlier drafts. This paper is University of Florida Contribution to Paleontology no. 415. 19 January 1993; accepted 23 April 1993 Divergence in Proteins, Mitochondria! DNA, and Reproductive Compatibility Across the Isthmus of Panama Nancy Knowlton,* Lee A. Weigt, Luis Anibal Solorzano, DeEtta K. Mills,t Eldredge Bermingham It is widely believed that gene flow connected many shallow water populations of the Caribbean and eastern Pacific until the Panama seaway closed 3.0 to 3.5 million years ago. Measurements of biochemical and reproductive divergence for seven closely related, transisthmian pairs of snapping shrimps (Alpheus) indicate, however, that isolation was staggered rather than simultaneous. The four least divergent pairs provide the best es- timate for rates of molecular divergence and speciation. Ecological, genetic, and geological data suggest that gene flow was disrupted for the remaining three pairs by environmental change several million years before the land barrier was complete. Ideographic isolation is thought to permit divergence and speciation by disruption of gene flow (J). Pairs of marine sister taxa separated by the Isthmus of Panama are ideal for studying these processes (2-5) because isolation of the Caribbean and the eastern Pacific is well dated and relatively recent (6, 7). This geological framework Smithsonian Tropical Research Institute, Apartado 2072, Balboa, Republic of Panama. *To whom correspondence should be addressed. Alternate mailing address: Smithsonian Tropical Re- search Institute, Unit 0948, APO AA 34002-0948, United States. tPresent address: Route 2, Box 538, Joshua, TX 76058. has prompted study of transisthmian sister taxa to test the accuracy of molecular clocks and to estimate the timing of other evolu- tionary events (3, 4, 8). It has been difficult to interpret inconsistencies and estimate possible phylogenetic differences in diver- gence rates (9), however, because of the limited number of taxa and characters stud- ied. To address these problems, we investi- gated divergence in allozymes, mitochon- drial DNA (mtDNA), and reproductive compatibility for seven shallow water trans- isthmian pairs of sister taxa in the snapping shrimp genus Alpheus. We used the taxonomic literature to identify transisthmian pairs that were spe- cifically and unambiguously described as each other's closest relatives on the basis of morphological criteria (10). Collections along the two coasts and adjacent islands of central Panama at depths less than 5 m revealed unrecognized sibling species in ad- dition to these pairs (11). In total, we examined 17 taxa (Table 1): two unambig- uous pairs (P4-C4, P5-C5), three triplets (P3-C3, P3-C3'; P6-C6, P6'-C6; P7-C7, P7'-C7), and one quartet (Pl-Cl, P1-C2, P2-C1, P2-C2). We used shared anatomi- cal and color pattern character states (12) to posit relations within the triplets and quartet. The result was seven morphologi- cally defined transisthmian sister species pairs (bold in Tables 1 and 2). For each taxon, we characterized allo- zymes by using conventional starch gel elec- trophoresis (13) and sequenced a segment of the mtDNA cytochrome oxidase I (COI) gene (14). Aggressive behavior was used as an estimate of behavioral components of reproductive compatibility . (15) because snapping shrimp attack heterospecific indi- viduals and all conspecifics except potential mates (16). We calculated genetic diver- gence between transisthmian pairs using Nei's D for allozymes and Kimura's corrected percent sequence divergence for mtDNA (17). We estimated divergence in behavioral compatibility by standardizing measures of tolerance and intolerance for transisthmian pairs against values observed in intraoce- anic, conspecific control matings (15). These three measures of divergence con- sistently support assignments of transisth- mian sister species pairs on the basis of morphology and color pattern. Within the P6' P6 C6 P3 C3 ca- ps - C5 0.6). 21. Medians of mean mtDNA divergences and Nei distances (Table 1) for the four pairs were used. These calibrations assume a linear relation be- tween time and divergence for the spans over which they are calculated or applied. They are broadly consistent with previous studies (3, 4, 8), although enzyme systems and mtDNA regions are not equivalent. 22. J. B. C. Jackson, P. Jung, A. G. Coates, L. 5. Collins, Science 260, 1624 (1993). This study also reveals variation in the timing of divergence com- parable to that exhibited by Alpheus. 23. L. 5. Collins, Paleontol. Soc. Spec. Pub. 6, 67 (1992). 24. Values of mean corrected percent sequence di- vergences for sympatric members of sibling spe- cies complexes are 8.1 (P1-P2), 16.4 (C1-C2), 12.1 (C3-C3'), 7.6 (P6-P6'), and 6.3 (P7-P7'). Nei's 0 values are 0.109 (P1-P2), 0.194 (C1-C2), 0.165 (C3-C3'), 0.216 (P6-P6'), and 0.019 (P7- P7'). 25. Habitat differences are most conspicuous in the Pacific [P. W. Glynn, Bull. Biol. Soc. Wash. 2, 13 (1972)]. Species P7 is normally collected in the shallow subtidal of offshore islands in dead coral," species P6 is only collected during extreme low tides (-60 to -85 cm), and species P5 is mid- intertidal but restricted to clearer waters of off- shore islands. In contrast, species P1, P2, P3, and P4 are abundant in the mid- to low-intertidal zone along the mainland. 26. The swimming abilities of crustacean larvae per- mit considerable habitat choice [R. S. Burton and M. W. Feldman, in Estuarine Comparisons, V. 5. Kennedy, Ed. (Academic Press, New York, 1982), SCIENCE ? VOL. 260 ? 11 JUNE 1993 1631 pp. 537-551], and distributions of larvae in the water column may reflect depth distributions of shallow-water adults [R. K. Grosberg, Ecology 63, 894 (1982)]. 27. J. A. Coyne and H. A. Orr, Evolution43, 362 (1989). 28. W. R. Rice, ibid., p. 223. 29. We thank J. Jara, F. Bouche, E. Gomez, and R. Hamilton for technical assistance; E. Duffy, A. Herre, J. Jackson, H, Lessios, A. Martin, P. Morris, R. Rowan, and D. Zeh for comments on the manuscript; the Smithsonian Institution for finan- cial support; and the Government of Panama (Recursos Marines) and the Kuna Nation for per- mission to collect specimens. 19 January 1993; accepted 26 April 1993 Large Odd-Numbered Carbon Clusters from Fullerene-Ozone Reactions Stephen W. McElvany, John H. Callahan, Mark M. Ross, Lowell D. Lamb, Donald R. Huffman The odd-numbered carbon clusters C119, C12g, and C139 have been observed in the mass spectra of toluene extracts of fullerene soots and of the products of ozone-fullerene reactions. Specifically, ozone-C60 reactions yield C119, ozone-C70 reactions yield C139, and ozone-(C60/C70) reactions produce C11g, C12g, and C139. These unexpected species correspond to dimers of C60, C60/C70, and C70, respectively, less one carbon atom, and are stable gas-phase ions with behavior similar to that of fullerenes. The results suggest a new route to functionalization and derivatization of fullerenes through controlled ozone- catalyzed cage-opening reactions. JNumerous studies have shown that there is a wide variety of fullerene chemical reactions (1). For example, one unusual aspect of fullerenes is their ability to un- dergo coalescence reactions that result in larger fullerenes (2-4). Although the de- tails of these reactions vary, in all cases observed to date coalescence apparently was caused by photon-induced radiation damage of fullerenes, and in all cases the reaction products had even numbers of carbon atoms. In a recent mass-spectral investigation of large fullerenes, we detected the pres- ence of the odd-numbered, pure carbon clusters C119, C129, and CI39 in toluene extracts of several fullerene soot samples, which we speculated to be the products of coalescence of two C60's, a C60 and C70 and two C70's, respectively. These large, odd-numbered carbon clusters are unexpected, given the overwhelming evi- dence for the preferential stability of large, even-numbered carbon clusters (5). Re- sults from a subsequent series of ozonolysis experiments support this interpretation and suggest that oxidation plays a key role in the production of these unusual species. These results have implications for several important issues in fullerene chemistry, in- cluding chemical reaction mechanisms and the resulting fullerene-based products, coa- lescence of fullerenes, and the molecular structure consideration raised by the exis- tence of odd-numbered "fullerenes." S. W. McElvany, J. H. Callahan, M. M. Ross, Code 6113/Chemistry Division, Naval Research Laboratory, Washington, DC 20375-5320. L 0. Lamb and 0. R. Huffman, Department of Physics, University of Arizona, Tucson, AZ 85721. A typical thermal desorption-negative ion mass spectrum (6, 7) of a toluene extract (8) of a commercial soot sample (9) is shown in Fig. 1. Although not shown, CL0~ and C70~ are approximately 103 to lCr times more abundant than the base peak in this spectrum. As expected, the abundances of fullerene ions (Cn~, n > 74) generally decrease with increasing size, with anomalously abundant C84 and C90. However, in addition to the even- numbered carbon clusters, ions are ob- served corresponding to C119, CI29, and C139. These odd-numbered carbon clusters were detected in a commercially available, unchromatographed mixture of fullerenes (9), as well as in toluene extracts of various fullerene soots [Polygon, SES (9), and "homemade" soot (7) produced at the Naval Research Laboratory]. In order to test the interpretation of the 100 60 ?Q a 9 ?40 20 Cn .jkllui mass-spectral results, two alternative ex- planations had to be ruled out. Namely, it was possible that these clusters were not stable species but only artifacts of the mass spectrometry, that is, these ions were gen- erated in the desorption-ionization pro- cess. In contrast to positive ion or laser desorption analysis, which may be compli- cated by fragmentation or coalescence of molecular species, previous studies of fullerenes indicate that thermal desorp- tion-negative ion analysis is much less prone to these artifacts (7). A second possibility was that these were not pure carbon molecules. The relative ion abun- dances in the distribution from mass-to- change (mix) ratios 1428 to 1433 were measured to be identical (within experi- mental error) to those calculated for C119 based on the natural 13C abundance (see inset of Fig. 1). Similar results were ob- tained for C129 which indicated that these ions correspond to odd-numbered all-car- bon species. (The abundance of C139, however, was too low to allow this type of analysis.) Further investigations showed that the presence of the odd-numbered carbon clusters is not affected by the sol- vent, as they are also observed in hexane and benzene extracts of fullerene-rich soot. Careful inspection of mass spectra (not shown) of the raw (unextracted) soot revealed very low abundances of these ions (?500 times less abundant than neighbor- ing even-n Cn). This observation and the analysis of the soot toluene extract (Fig. 1) suggest that the odd-numbered clusters are more soluble than the comparably sized even-numbered fullerenes. In addition, the use of ammonia or argon instead of methane as the buffer gas in the analysis yielded similar results, indicating that the formation of odd-numbered clusters is not due to the buffer gas. As a complement to the negative ion analyses described above, electron ioniza- tion to generate positive ions of thermally 1427 14291431 1433 ^lii t |),l,l, t , ,,i,yl|j,i,ul|,,,| i,,, 1000 1200 1400 1600 mlz Fig. 1. Negative ion mass spectrum of a toluene ex- tract of graphitic soot with the inset showing the ex- panded region around Cl19~ 1800 2000 1632 SCIENCE VOL. 260 11 JUNE 1993