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Whole-genome analyses resolve early branches in the tree of life of modern birds

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dc.contributor.author Jarvis, Erich D. en
dc.contributor.author Mirarab, Siavash en
dc.contributor.author Aberer, Andre J. en
dc.contributor.author Li, Bo en
dc.contributor.author Houde, Peter en
dc.contributor.author Li, Cai en
dc.contributor.author Ho, Simon Y. W. en
dc.contributor.author Faircloth, Brant C. en
dc.contributor.author Nabholz, Benoit en
dc.contributor.author Howard, Jason T. en
dc.contributor.author Suh, Alexander en
dc.contributor.author Weber, Claudia C. en
dc.contributor.author Fonseca, Rute R. da en
dc.contributor.author Li, Jianwen en
dc.contributor.author Zhang, Fang en
dc.contributor.author Li, Hui en
dc.contributor.author Zhou, Long en
dc.contributor.author Narula, Nitish en
dc.contributor.author Liu, Liang en
dc.contributor.author Ganapathy, Ganesh en
dc.contributor.author Boussau, Bastien en
dc.contributor.author Bayzid, Md Shamsuzzoha en
dc.contributor.author Zavidovych, Volodymyr en
dc.contributor.author Subramanian, Sankar en
dc.contributor.author Gabaldón, Toni en
dc.contributor.author Capella-Gutiérrez, Salvador en
dc.contributor.author Huerta-Cepas, Jaime en
dc.contributor.author Rekepalli, Bhanu en
dc.contributor.author Munch, Kasper en
dc.contributor.author Schierup, Mikkel en
dc.contributor.author Lindow, Bent en
dc.contributor.author Warren, Wesley C. en
dc.contributor.author Ray, David en
dc.contributor.author Green, Richard E. en
dc.contributor.author Bruford, Michael W. en
dc.contributor.author Zhan, Xiangjiang en
dc.contributor.author Dixon, Andrew en
dc.contributor.author Li, Shengbin en
dc.contributor.author Li, Ning en
dc.contributor.author Huang, Yinhua en
dc.contributor.author Derryberry, Elizabeth P. en
dc.contributor.author Bertelsen, Mads Frost en
dc.contributor.author Sheldon, Frederick H. en
dc.contributor.author Brumfield, Robb T. en
dc.contributor.author Mello, Claudio V. en
dc.contributor.author Lovell, Peter V. en
dc.contributor.author Wirthlin, Morgan en
dc.contributor.author Schneider, Maria Paula Cruz en
dc.contributor.author Prosdocimi, Francisco en
dc.contributor.author Samaniego, José Alfredo en
dc.contributor.author Velazquez, Amhed Missael Vargas en
dc.contributor.author Alfaro-Núñez, Alonzo en
dc.contributor.author Campos, Paula F. en
dc.contributor.author Petersen, Bent en
dc.contributor.author Sicheritz-Ponten, Thomas en
dc.contributor.author Pas, An en
dc.contributor.author Bailey, Tom en
dc.contributor.author Scofield, Paul en
dc.contributor.author Bunce, Michael en
dc.contributor.author Lambert, David M. en
dc.contributor.author Zhou, Qi en
dc.contributor.author Perelman, Polina en
dc.contributor.author Driskell, Amy C. en
dc.contributor.author Shapiro, Beth en
dc.contributor.author Xiong, Zijun en
dc.contributor.author Zeng, Yongli en
dc.contributor.author Liu, Shiping en
dc.contributor.author Li, Zhenyu en
dc.contributor.author Liu, Binghang en
dc.contributor.author Wu, Kui en
dc.contributor.author Xiao, Jin en
dc.contributor.author Yinqi, Xiong en
dc.contributor.author Zheng, Qiuemei en
dc.contributor.author Zhang, Yong en
dc.contributor.author Yang, Huanming en
dc.contributor.author Wang, Jian en
dc.contributor.author Smeds, Linnea en
dc.contributor.author Rheindt, Frank E. en
dc.contributor.author Braun, Michael J. en
dc.contributor.author Fjeldsa, Jon en
dc.contributor.author Orlando, Ludovic en
dc.contributor.author Barker, F. K. en
dc.contributor.author Jønsson, Knud Andreas en
dc.contributor.author Johnson, Warren E. en
dc.contributor.author Koepfli, Klaus-Peter en
dc.contributor.author O'Brien, Stephen en
dc.contributor.author Haussler, David en
dc.contributor.author Ryder, Oliver A. en
dc.contributor.author Rahbek, Carsten en
dc.contributor.author Willerslev, Eske en
dc.contributor.author Graves, Gary R. en
dc.contributor.author Glenn, Travis C. en
dc.contributor.author McCormack, John en
dc.contributor.author Burt, Dave en
dc.contributor.author Ellegren, Hans en
dc.contributor.author Alström, Per en
dc.contributor.author Edwards, Scott V. en
dc.contributor.author Stamatakis, Alexandros en
dc.contributor.author Mindell, David P. en
dc.contributor.author Cracraft, Joel en
dc.contributor.author Braun, Edward L. en
dc.contributor.author Warnow, Tandy en
dc.contributor.author Jun, Wang en
dc.contributor.author Gilbert, M. T. en
dc.contributor.author Zhang, Guojie en
dc.date.accessioned 2015-04-20T15:15:42Z
dc.date.available 2015-04-20T15:15:42Z
dc.date.issued 2014
dc.identifier.citation Jarvis, Erich D., Mirarab, Siavash, Aberer, Andre J., Li, Bo, Houde, Peter, Li, Cai, Ho, Simon Y. W., Faircloth, Brant C., Nabholz, Benoit, Howard, Jason T., Suh, Alexander, Weber, Claudia C., Fonseca, Rute R. da, Li, Jianwen, Zhang, Fang, Li, Hui, Zhou, Long, Narula, Nitish, Liu, Liang, Ganapathy, Ganesh, Boussau, Bastien, Bayzid, Md Shamsuzzoha, Zavidovych, Volodymyr, Subramanian, Sankar, Gabaldón, Toni et al. 2014. "<a href="https%3A%2F%2Frepository.si.edu%2Fhandle%2F10088%2F25467">Whole-genome analyses resolve early branches in the tree of life of modern birds</a>." <em>Science</em>. 346 (6215):1320&ndash;1331. <a href="https://doi.org/10.1126/science.1253451">https://doi.org/10.1126/science.1253451</a> en
dc.identifier.issn 0036-8075
dc.identifier.uri http://hdl.handle.net/10088/25467
dc.description.abstract To better determine the history of modern birds, we performed a genome-scale phylogenetic analysis of 48 species representing all orders of Neoaves using phylogenomic methods created to handle genome-scale data. We recovered a highly resolved tree that confirms previously controversial sister or close relationships. We identified the first divergence in Neoaves, two groups we named Passerea and Columbea, representing independent lineages of diverse and convergently evolved land and water bird species. Among Passerea, we infer the common ancestor of core landbirds to have been an apex predator and confirm independent gains of vocal learning. Among Columbea, we identify pigeons and flamingoes as belonging to sister clades. Even with whole genomes, some of the earliest branches in Neoaves proved challenging to resolve, which was best explained by massive protein-coding sequence convergence and high levels of incomplete lineage sorting that occurred during a rapid radiation after the Cretaceous-Paleogene mass extinction event about 66 million years ago. en
dc.relation.ispartof Science en
dc.title Whole-genome analyses resolve early branches in the tree of life of modern birds en
dc.type Journal Article en
dc.identifier.srbnumber 133189
dc.identifier.doi 10.1126/science.1253451
rft.jtitle Science
rft.volume 346
rft.issue 6215
rft.spage 1320
rft.epage 1331
dc.description.SIUnit NH-Vertebrate Zoology en
dc.description.SIUnit NMNH en
dc.description.SIUnit NZP en
dc.description.SIUnit Peer-reviewed en
dc.citation.spage 1320
dc.citation.epage 1331


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