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Browsing by Author "Patterson, Nick"

Browsing by Author "Patterson, Nick"

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  • Ancient DNA and deep population structure in sub-Saharan African foragers 
    Lipson, Mark; Sawchuk, Elizabeth A.; Thompson, Jessica C.; Oppenheimer, Jonas; Tryon, Christian A.; Ranhorn, Kathryn L.; de Luna, Kathryn M.; Sirak, Kendra A.; Olalde, Inigo; Ambrose, Stanley H.; Arthur, John W.; Arthur, Kathryn J. W.; Ayodo, George; Bertacchi, Alex; Cerezo-Roman, Jessica I.; Culleton, Brendan J.; Curtis, Matthew C.; Davis, Jacob; Gidna, Agness O.; Hanson, Annalys; Kaliba, Potiphar; Katongo, Maggie; Kwekason, Amandus; Laird, Myra F.; Lewis, Jason; Mabulla, Audax Z. P.; Mapemba, Fredrick; Morris, Alan; Mudenda, George; Mwafulirwa, Raphael; Mwangomba, Daudi; Ndiema, Emmanuel; Ogola, Christine; Schilt, Flora; Willoughby, Pamela R.; Wright, David K.; Zipkin, Andrew; Pinhasi, Ron; Kennett, Douglas J.; Manthi, Fredrick Kyalo; Rohland, Nadin; Patterson, Nick; Reich, David; Prendergast, Mary E. (2022)
    Multiple lines of genetic and archaeological evidence suggest that there were major demographic changes in the terminal Late Pleistocene epoch and early Holocene epoch of sub-Saharan Africa(1-4). Inferences about this ...
  • The formation of human populations in South and Central Asia 
    Narasimhan, Vagheesh M.; Patterson, Nick; Moorjani, Priya; Rohland, Nadin; Bernardos, Rebecca; Mallick, Swapan; Lazaridis, Losif; Nakatsuka, Nathan; Olalde, Iffigo; Lipson, Mark; Kim, Alexander M.; Olivieri, Luca M.; Coppa, Alfredo; Vidale, Massimo; Mallory, James; Moiseyev, Vyacheslav; Kitov, Egor; Monge, Janet; Adamski, Nicole; Alexi, Neel; Broomandkhoshbacht, Nasreen; Candilio, Francesca; Callan, Kimberly; Cheronet, Olivia; Culleton, Brendan J.; Ferry, Matthew; Fernandes, Daniel; Freilih, Suzanne; Gamarra, Beatriz; Gaudio, Daniel; Hajdinjak, Mateja; Harney, Eadaoin; Harper, Thomas K.; Keatin, Denise; Lawson, Ann Marie; Mah, Matthew; Mandl, Kirsten; Michel, Megan; Novak, Mario; Oppenheimer, Jonas; Rai, Niraj; Sirak, Kendra; Slon, Viviane; Stewardson, Kristin; Zalzala, Fatma; Zhang, Zhao; Akhatov, Gaziz; Bagashev, Anatoly N.; Bagnera, Alessandra; Baitanayev, Bauryzhan; Bendezu-Sarmiento, Julio; Bissembaev, Arman A.; Bonora, Gian Luca; Chargynov, Temirlan T.; Chikisheva, Tatiana; Dashkovskiy, Petr K.; Derevianko, Anatoly; Dobes, Miroslav; Douka, Katerina; Dubova, Nadezhda; Duisengali, Meiram N.; Enshin, Dmitry; Epimakhov, Andrey; Fribus, Alexey V.; Fuller, Dorian; Goryachev, Alexander; Gromov, Andrey; Grushin, Sergey P.; Hanks, Bryan; Judd, Margaret; Kazizov, Erlan; Khokhlov, Aleksander; Krygin, Aleksander P.; Kupriyanova, Elena; Kuznetsov, Pavel; Luiseli, Donata; Maksudov, Farhod; Mamedov, Asian M.; Mamirov, Talgat B.; Meiklejohn, Christopher; Merrett, Deborah C.; Micheli, Roberto; Mochalov, Oleg; Mustafokulov, Samariddin; Nayak, Ayushi; Pettener, Davide; Potts, Richard; Razhev, Dmitry; Rykun, Marina; Sarno, Stefania; Savenkova, Tatyana M.; Sikhymbaeva, Kulyan; Slepchenko, Sergey M.; Soltobaev, Oroz A.; Stepanova, Nadezhda; Svyatko, Svetlana; Tabaldiev, Kubatbek; Teschler-Nicola, Maria; Tishkin, Alexey A.; Tkachev, Vitaly V.; Vasilyev, Sergey; Veleminsky, Petr; Voyakin, Dmitriy; Yermolayeva, Antonina; Zahir, Muhammad; Zubkov, Valery S.; Zubova, Alisa; Shinde, Vasant S.; Lalueza-Fox, Carles; Meyer, Matthias; Anthony, David; Boivin, Nicole; Thangaraj, Kumnarasamy; Kennett, Douglas J.; Frachetti, Michael; Pinhasi, Ron; Reich, David (2019)
    By sequencing 523 ancient humans, we show that the primary source of ancestry in modern South Asians is a prehistoric genetic gradient between people related to early hunter-gatherers of Iran and Southeast Asia. After the ...
  • Genetic diversity and population structure of the endangered marsupial <I>Sarcophilus harrisii </I>(Tasmanian devil) 
    Miller, Webb; Hayes, Vanessa M.; Ratan, Aakrosh; Petersen, Desiree C.; Wittekindt, Nicola E.; Miller, Jason; Walenz, Brian; Knight, James; Qi, Ji; Zhao, Fangqing; Wang, Qingyu; Bedoya-Reina, Oscar C.; Katiyar, Neerja; Tomsho, Lynn P.; McClellan Kasson, Lindsay; Hardie, Rae-Anne; Woodbridge, Paula; Tindall, Elizabeth A.; Bertelsen, Mads Frost; Dixon, Dale; Pyecroft, Stephen; Helgen, Kristofer M.; Lesk, Arthur M.; Pringle, Thomas H.; Patterson, Nick; Zhang, Yu; Kreiss, Alexandre; Woods, Gregory M.; Jones, Menna E.; Schuster, Stephan C. (2011)
    The Tasmanian devil (Sarcophilus harrisii) is threatened with extinction because of a contagious cancer known as Devil Facial Tumor Disease. The inability to mount an immune response and to reject these tumors might be ...
  • Genomic architecture and introgression shape a butterfly radiation 
    Edelman, Nathaniel B.; Frandsen, Paul B.; Miyagi, Michael; Clavijo, Bernardo; Davey, John; Dikow, Rebecca B.; Garcia-Accinelli, Gonzalo; Van Belleghem, Steven M.; Patterson, Nick; Neafsey, Daniel E.; Challis, Richard; Kumar, Sujai; Moreira, Gilson R. P.; Salazar, Camilo; Chouteau, Mathieu; Counterman, Brian A.; Papa, Riccardo; Blaxter, Mark; Reed, Robert D.; Dasmahapatra, Kanchon K.; Kronforst, Marcus; Joron, Mathieu; Jiggins, Chris D.; McMillan, W. Owen; Di Palma, Federica; Blumberg, Andrew J.; Wakeley, John; Jaffe, David; Mallet, James (2019)
    We used 20 de novo genome assemblies to probe the speciation history and architecture of gene flow in rapidly radiating Heliconius butterflies. Our tests to distinguish incomplete lineage sorting from introgression indicate ...
  • Genomic architecture and introgression shape a butterfly radiation 
    Edelman, Nathaniel B.; Frandsen, Paul B.; Miyagi, Michael; Clavijo, Bernardo; Davey, John; Dikow, Rebecca; García-Accinelli, Gonzalo; van Belleghem, Steven; Patterson, Nick; Neafsey, Daniel E.; Challis, Richard; Kumar, Sujai; Moreira, Gilson; Salazar, Camilo; Chouteau, Mathieu; Counterman, Brian; Papa, Riccardo; Blaxter, Mark; Reed, Robert D.; Dasmahapatra, Kanchon; Kronforst, Marcus; Joron, Mathieu; Jiggins, Chris D.; McMillan, W. O.; Di Palma, Federica; Blumberg, Andrew J.; Wakeley, John; Jaffe, David; Mallet, James (Evolutionary Biology, 2018)
    We here pioneer a low-cost assembly strategy for 20 Heliconiini genomes to characterize the evolutionary history of the rapidly radiating genus Heliconius . A bifurcating tree provides a poor fit to the data, and we therefore ...

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