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Browsing by Author "McCormack, John E."

Browsing by Author "McCormack, John E."

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  • Corrigendum to Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences [Mol. Phylogenet. Evol. 62 (2012) 397 406] 
    McCormack, John E.; Maley, James M.; Hird, Sarah M.; Derryberry, Elizabeth P.; Graves, Gary R.; Brumfield, Robb T. (2013)
  • Genomic approaches to understanding population divergence and speciation in birds 
    Toews, David P. L.; Campagna, Leonardo; Taylor, Scott A.; Balakrishnan, Christopher N.; Baldassarre, Daniel T.; Deane-Coe, Petra; Harvey, Michael G.; Hooper, Daniel M.; Irwin, Darren E.; Judy, Caroline D.; Mason, Nicholas A.; McCormack, John E.; McCracken, Kevin G.; Oliveros, Carl H.; Safran, Rebecca J.; Scordato, Elizabeth S. C.; Stryjewski, Katherine Faust; Tigano, Anna; Uy, J. A.; Winger, Benjamin M. (2016)
    The widespread application of high-throughput sequencing in studying evolutionary processes and patterns of diversification has led to many important discoveries. However, the barriers to utilizing these technologies and ...
  • Hybrid zone or hybrid lineage: a genomic reevaluation of Sibley's classic species conundrum in <i>Pipilo </i>towhees 
    DeRaad, Devon A.; Applewhite, Emily E.; Tsai, Whitney L. E.; Terrill, Ryan S.; Kingston, Sarah E.; Braun, Michael J.; McCormack, John E. (2023)
    Hybrid zones can be studied by modeling clines of trait variation (e.g., morphology, genetics) over a linear transect. Yet, hybrid zones can also be spatially complex, can shift over time, and can even lead to the formation ...
  • Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences 
    McCormack, John E.; Maley, James M.; Hird, Sarah M.; Derryberry, Elizabeth P.; Graves, Gary R.; Brumfield, Robb T. (2012)
    Next generation sequencing (NGS) technologies are revolutionizing many biological disciplines but have been slow to take root in phylogeography. This is partly due to the difficulty of using NGS to sequence orthologous DNA ...
  • Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes 
    St John, John A.; Braun, Edward L.; Isberg, Sally R.; Miles, Lee G.; Chong, Amanda Y.; Gongora, Jaime; Dalzell, Pauline; Moran, Christopher; Bed'Hom, Bertrand; Abzhanov, Arhat; Burguess, Shane C.; Cooksey, Amanda M.; Castoe, Todd A.; Crawford, Nicholas G.; Densmore, Llewellyn D.; Drew, Jennifer C.; Edwards, Scott V.; Faircloth, Brant C.; Fujita, Matthew K.; Greenwold, Matthew J.; Hoffman, Federico G.; Howard, Jonathan M.; Iguchi, Taisen; Janes, Daniel E.; Khan, Shaid Yar; Kohno, Satomi; deKoning, AP Jason; Lance, Stacey L.; McCarthy, Fiona M.; McCormack, John E.; Merchant, Mark E.; Peterson, Daniel G.; Pollock, David D.; Pourmand, Nader; Raney, Brian J.; Roessler, Kyria A.; Sanford, Jeremy R.; Sawyer, Roger H.; Schmidt, Carl J.; Triplett, Eric W.; Tuberville, Tracey D.; Venegas-Anaya, Miryam D.; Howard, Jason T.; Jarvis, Erich D.; Guillette Jr., Louis J.; Glenn, Travis C.; Green, Richard E.; Ray, David A. (2012)
  • Specimen collection is essential for modern science 
    Nachman, Michael W.; Beckman, Elizabeth J.; Bowie, Rauri Ck; Cicero, Carla; Conroy, Chris J.; Dudley, Robert; Hayes, Tyrone B.; Koo, Michelle S.; Lacey, Eileen A.; Martin, Christopher H.; McGuire, Jimmy A.; Patton, James L.; Spencer, Carol L.; Tarvin, Rebecca D.; Wake, Marvalee H.; Wang, Ian J.; Achmadi, Anang; Álvarez-Castañeda, Sergio Ticul; Andersen, Michael J.; Arroyave, Jairo; Austin, Christopher C.; Barker, F. K.; Barrow, Lisa N.; Barrowclough, George F.; Bates, John; Bauer, Aaron M.; Bell, Kayce C.; Bell, Rayna C.; Bronson, Allison W.; Brown, Rafe M.; Burbrink, Frank T.; Burns, Kevin J.; Cadena, Carlos Daniel; Cannatella, David C.; Castoe, Todd A.; Chakrabarty, Prosanta; Colella, Jocelyn P.; Cook, Joseph A.; Cracraft, Joel L.; Davis, Drew R.; Davis Rabosky, Alison R.; D’Elía, Guillermo; Dumbacher, John P.; Dunnum, Jonathan L.; Edwards, Scott V.; Esselstyn, Jacob A.; Faivovich, Julián; Fjeldså, Jon; Flores-Villela, Oscar; Ford, Kassandra; Fuchs, Jérôme; Fujita, Matthew K.; Good, Jeffrey M.; Greenbaum, Eli; Greene, Harry W.; Hackett, Shannon; Hamidy, Amir; Hanken, James; Haryoko, Tri; Hawkins, Melissa Tr; Heaney, Lawrence R.; Hillis, David M.; Hollingsworth, Bradford D.; Hornsby, Angela D.; Hosner, Peter A.; Irham, Mohammad; Jansa, Sharon; Jiménez, Rosa Alicia; Joseph, Leo; Kirchman, Jeremy J.; LaDuc, Travis J.; Leaché, Adam D.; Lessa, Enrique P.; López-Fernández, Hernán; Mason, Nicholas A.; McCormack, John E.; McMahan, Caleb D.; Moyle, Robert G.; Ojeda, Ricardo A.; Olson, Link E.; Kin Onn, Chan; Parenti, Lynne R.; Parra-Olea, Gabriela; Patterson, Bruce D.; Pauly, Gregory B.; Pavan, Silvia E.; Peterson, A. T.; Poe, Steven; Rabosky, Daniel L.; Raxworthy, Christopher J.; Reddy, Sushma; Rico-Guevara, Alejandro; Riyanto, Awal; Rocha, Luiz A.; Ron, Santiago R.; Rovito, Sean M.; Rowe, Kevin C.; Rowley, Jodi; Ruane, Sara; Salazar-Valenzuela, David; Shultz, Allison J.; Sidlauskas, Brian; Sikes, Derek S.; Simmons, Nancy B.; Stiassny, Melanie L. J.; Streicher, Jeffrey W.; Stuart, Bryan L.; Summers, Adam P.; Tavera, Jose; Teta, Pablo; Thompson, Cody W.; Timm, Robert M.; Torres-Carvajal, Omar; Voelker, Gary; Voss, Robert S.; Winker, Kevin; Witt, Christopher; Wommack, Elizabeth A.; Zink, Robert M. (2023)
  • Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis 
    McCormack, John E.; Faircloth, Brant C.; Crawford, Nicholas G.; Gowaty, Patricia Adair; Brumfield, Robb T.; Glenn, Travis C. (2012)
    Phylogenomics offers the potential to fully resolve the Tree of Life, but increasing genomic coverage also reveals conflicting evolutionary histories among genes, demanding new analytical strategies for elucidating a single ...

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