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Browsing by Author "Green, Richard E."

Browsing by Author "Green, Richard E."

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  • Saremi, Nedda F.; Supple, Megan A.; Byrne, Ashley; Cahill, James A.; Coutinho, Luiz Lehmann; Dalén, Love; Figueiró, Henrique V.; Johnson, Warren E.; Milne, Heather J.; O'Brien, Stephen J.; O'Connell, Brendan; Onorato, David P.; Riley, Seth P. D.; Sikich, Jeff A.; Stahler, Daniel R.; Villela, Priscilla Marqui Schmidt; Vollmers, Christopher; Wayne, Robert K.; Eizirik, Eduardo; Corbett-Detig, Russell; Green, Richard E.; Wilmers, Christopher C.; Shapiro, Beth (2019)
    An amendment to this paper has been published and can be accessed via a link at the top of the paper.
  • Zhang, Guojie; Li, Cai; Li, Qiye; Li, Bo; Larkin, Denis M.; Lee, Chul; Storz, Jay F.; Antunes, Agostinho; Greenwold, Matthew J.; Meredith, Robert W.; Ödeen, Anders; Cui, Jie; Zhou, Qi; Xu, Luohao; Pan, Hailin; Wang, Zongji; Jin, Lijun; Zhang, Pei; Hu, Haofu; Yang, Wei; Hu, Jiang; Xiao, Jin; Yang, Zhikai; Liu, Yang; Xie, Qiaolin; Yu, Hao; Lian, Jinmin; Wen, Ping; Zhang, Fang; Li, Hui; Zeng, Yongli; Xiong, Zijun; Liu, Shiping; Zhou, Long; Huang, Zhiyong; An, Na; Wang, Jie; Zheng, Qiumei; Xiong, Yingqi; Wang, Guangbiao; Wang, Bo; Wang, Jingjing; Fan, Yu; Fonseca, Rute R. da; Alfaro-Núñez, Alonzo; Schubert, Mikkel; Orlando, Ludovic; Mourier, Tobias; Howard, Jason T.; Ganapathy, Ganeshkumar; Pfenning, Andreas; Whitney, Osceola; Rivas, Miriam V.; Hara, Erina; Smith, Julia; Farré, Marta; Narayan, Jitendra; Slavov, Gancho; Romanov, Michael N.; Borges, Rui; Machado, João Paulo; Khan, Imran; Springer, Mark S.; Gatesy, John; Hoffmann, Federico G.; Opazo, Juan C.; Håstad, Olle; Sawyer, Roger H.; Kim, Heebal; Kim, Kyu-Won; Kim, Hyeon Jeong; Cho, Seoae; Li, Ning; Huang, Yinhua; Bruford, Michael W.; Zhan, Xiangjiang; Dixon, Andrew; Bertelsen, Mads F.; Derryberry, Elizabeth P.; Warren, Wesley; Wilson, Richard K.; Li, Shengbin; Ray, David A.; Green, Richard E.; O'Brien, Stephen J.; Griffin, Darren; Johnson, Warren E.; Haussler, David; Ryder, Oliver A.; Willerslev, Eske; Graves, Gary R.; Alström, Per; Fjeldså, Jon; Mindell, David P.; Edwards, Scott V.; Braun, Edward L.; Rahbek, Carsten; Burt, David W.; Houde, Peter; Zhang, Yong; Yang, Huanming; Wang, Jian; Jarvis, Erich D.; Gilbert, M. T.; Wang, Jun; Ye, Chen; Liang, Shaoguang; Yan, Zengli; Zepeda, M. L.; Campos, Paula F.; Velazquez, Amhed Missael Vargas; Samaniego, José Alfredo; Avila-Arcos, Mar; Martin, Michael D.; Barnett, Ross; Ribeiro, Angela M.; Mello, Claudio V.; Lovell, Peter V.; Almeida, Daniela; Maldonado, Emanuel; Pereira, Joana; Sunagar, Kartik; Philip, Siby; Dominguez-Bello, Maria; Bunce, Michael; Lambert, David; Brumfield, Robb T.; Sheldon, Frederick H.; Holmes, Edward C.; Gardner, Paul P.; Steeves, Tammy E.; Stadler, Peter F.; Burge, Sarah W.; Lyons, Eric; Smith, Jacqueline; McCarthy, Fiona; Pitel, Frederique; Rhoads, Douglas; Froman, David P. (2014)
    Birds are the most species-rich class of tetrapod vertebrates and have wide relevance across many research fields. We explored bird macroevolution using full genomes from 48 avian species representing all major extant ...
  • Haussler, David; O'Brien, Stephen J.; Ryder, Oliver A.; Barker, F. Keith; Clamp, Michele; Crawford, Andrew J.; Hanner, Robert; Hanotte, Olivier; McGuire, Jimmy A.; Miller, Webb; Murphy, Robert W.; Murphy, William J.; Sheldon, Frederick H.; Sinervo, Barry; Venkatesh, Byrappa; Wiley, Edward O.; Allendorf, Fred W.; Amato, George; Baker, C. Scott; Bauer, Aaron; Beja-Pereira, Albano; Bermingham, Eldredge; Bernardi, Giacomo; Bonvicino, Cibele R.; Brenner, Sydney; Burke, Terry; Cracraft, Joel; Diekhans, Mark; Edwards, Scott; Ericson, Per G. P.; Estes, James; Fjelsda, Jon; Flesness, Nate; Gamble, Tony; Gaubert, Philippe; Graphodatsky, Alexander S.; Graves, Jennifer A. Marshall; Green, Eric D.; Green, Richard E.; Hackett, Shannon; Hebert, Paul; Helgen, Kristofer M.; Joseph, Leo; Kessing, Bailey; Kingsley, David M.; Lewin, Harris A.; Luikart, Gordon; Martelli, Paolo; Moreira, Miguel A. M.; Nguyen, Ngan; Orti, Guillermo; Pike, Brian L.; Rawson, David Michael; Schuster, Stephan C.; Seuanez, Hector N.; Shaffer, H. Bradley; Springer, Mark S.; Stuart, Joshua Michael; Sumner, Joanna; Teeling, Emma; Vrijenhoek, Robert C.; Ward, Robert D.; Warren, Wesley C.; Wayne, Robert K.; Williams, Terrie M.; Wolfe, Nathan D.; Zhang, Ya-Ping; Graph-Odatsky, Alexander; Johnson, Warren E.; Felsenfeld, Adam; Turner, S. C. (2009)
    The human genome project has been recently complemented by whole-genome assessment sequence of 32 mammals and 24 nonmammalian vertebrate species suitable for comparative genomic analyses. Here we anticipate a precipitous ...
  • Wang, Ming-Shan; Thakur, Mukesh; Jhala, Yadvendradev; Wang, Sheng; Srinivas, Yellapu; Dai, Shan-Shan; Liu, Zheng-Xi; Chen, Hong-Man; Green, Richard E.; Koepfli, Klaus-Peter; Shapiro, Beth (2022)
    The gray wolf (Canis lupus) is among the few large carnivores that survived the Late Pleistocene megafaunal extinctions. Thanks to their complex history of admixture and extensive geographic range, the number of gray wolf ...
  • Cahill, James A.; Stirling, Ian; Kistler, Logan J.; Salamzade, Rauf; Ersmark, Erik; Fulton, Tara L.; Stiller, Mathias; Green, Richard E.; Shapiro, Beth (2015)
  • Saremi, Nedda F.; Supple, Megan A.; Byrne, Ashley; Cahill, James A.; Coutinho, Luiz Lehmann; Dalén, Love; Figueiró, Henrique V.; Johnson, Warren E.; Milne, Heather J.; O'Brien, Stephen J.; O'Connell, Brendan; Onorato, David P.; Riley, Seth P. D.; Sikich, Jeff A.; Stahler, Daniel R.; Villela, Priscilla Marqui Schmidt; Vollmers, Christopher; Wayne, Robert K.; Eizirik, Eduardo; Corbett-Detig, Russell; Green, Richard E.; Wilmers, Christopher C.; Shapiro, Beth (2019)
    Pumas are the most widely distributed felid in the Western Hemisphere. Increasingly, however, human persecution and habitat loss are isolating puma populations. To explore the genomic consequences of this isolation, we ...
  • St John, John A.; Braun, Edward L.; Isberg, Sally R.; Miles, Lee G.; Chong, Amanda Y.; Gongora, Jaime; Dalzell, Pauline; Moran, Christopher; Bed'Hom, Bertrand; Abzhanov, Arhat; Burguess, Shane C.; Cooksey, Amanda M.; Castoe, Todd A.; Crawford, Nicholas G.; Densmore, Llewellyn D.; Drew, Jennifer C.; Edwards, Scott V.; Faircloth, Brant C.; Fujita, Matthew K.; Greenwold, Matthew J.; Hoffman, Federico G.; Howard, Jonathan M.; Iguchi, Taisen; Janes, Daniel E.; Khan, Shaid Yar; Kohno, Satomi; deKoning, AP Jason; Lance, Stacey L.; McCarthy, Fiona M.; McCormack, John E.; Merchant, Mark E.; Peterson, Daniel G.; Pollock, David D.; Pourmand, Nader; Raney, Brian J.; Roessler, Kyria A.; Sanford, Jeremy R.; Sawyer, Roger H.; Schmidt, Carl J.; Triplett, Eric W.; Tuberville, Tracey D.; Venegas-Anaya, Miryam D.; Howard, Jason T.; Jarvis, Erich D.; Guillette Jr., Louis J.; Glenn, Travis C.; Green, Richard E.; Ray, David A. (2012)
  • Rhie, Arang; McCarthy, Shane A.; Fedrigo, Olivier; Damas, Joana; Formenti, Giulio; Koren, Sergey; Uliano-Silva, Marcela; Chow, William; Fungtammasan, Arkarachai; Kim, Juwan; Lee, Chul; Ko, Byung June; Chaisson, Mark; Gedman, Gregory L.; Cantin, Lindsey J.; Thibaud-Nissen, Francoise; Haggerty, Leanne; Bista, Iliana; Smith, Michelle; Haase, Bettina; Mountcastle, Jacquelyn; Winkler, Sylke; Paez, Sadye; Howard, Jason; Vernes, Sonja C.; Lama, Tanya M.; Grutzner, Frank; Warren, Wesley C.; Balakrishnan, Christopher N.; Burt, Dave; George, Julia M.; Biegler, Matthew T.; Iorns, David; Digby, Andrew; Eason, Daryl; Robertson, Bruce; Edwards, Taylor; Wilkinson, Mark; Turner, George; Meyer, Axel; Kautt, Andreas F.; Franchini, Paolo; Detrich, H. William; Svardal, Hannes; Wagner, Maximilian; Naylor, Gavin J. P.; Pippel, Martin; Malinsky, Milan; Mooney, Mark; Simbirsky, Maria; Hannigan, Brett T.; Pesout, Trevor; Houck, Marlys; Misuraca, Ann; Kingan, Sarah B.; Hall, Richard; Kronenberg, Zev; Sovi, Ivan; Dunn, Christopher; Ning, Zemin; Hastie, Alex; Lee, Joyce; Selvaraj, Siddarth; Green, Richard E.; Putnam, Nicholas H.; Gut, Ivo; Ghurye, Jay; Garrison, Erik; Sims, Ying; Collins, Joanna; Pelan, Sarah; Torrance, James; Tracey, Alan; Wood, Jonathan; Dagnew, Robel E.; Guan, Dengfeng; London, Sarah E.; Clayton, David F.; Mello, Claudio, V.; Friedrich, Samantha R.; Lovell, Peter, V.; Osipova, Ekaterina; Al-Ajli, Farooq O.; Secomandi, Simona; Kim, Heebal; Theofanopoulou, Constantina; Hiller, Michael; Zhou, Yang; Harris, Robert S.; Makova, Kateryna D.; Medvedev, Paul; Hoffman, Jinna; Masterson, Patrick; Clark, Karen; Martin, Fergal; Howe, Kevin; Flicek, Paul; Walenz, Brian P.; Kwak, Woori; Clawson, Hiram; Diekhans, Mark; Nassar, Luis; Paten, Benedict; Kraus, Robert H. S.; Crawford, Andrew J.; Gilbert, M. Thomas P.; Zhang, Guojie; Venkatesh, Byrappa; Murphy, Robert W.; Koepfli, Klaus-Peter; Shapiro, Beth; Johnson, Warren E.; Di Palma, Federica; Marques-Bonet, Tomas; Teeling, Emma C.; Warnow, Tandy; Graves, Jennifer Marshall; Ryder, Oliver A.; Haussler, David; O'Brien, Stephen J.; Korlach, Jonas; Lewin, Harris A.; Howe, Kerstin; Myers, Eugene W.; Durbin, Richard; Phillippy, Adam M.; Jarvis, Erich D. (2021)
    The Vertebrate Genome Project has used an optimized pipeline to generate high-quality genome assemblies for sixteen species (representing all major vertebrate classes), which have led to new biological insights. High-quality ...
  • Kistler, Logan J.; Montenegro, Álvaro; Smith, Bruce D.; Gifford, John A.; Green, Richard E.; Newsom, Lee A.; Shapiro, Beth (2014)
    Bottle gourd (Lagenaria siceraria) was one of the first domesticated plants, and the only one with a global distribution during pre-Columbian times. Although native to Africa, bottle gourd was in use by humans in east Asia, ...
  • Jarvis, Erich D.; Mirarab, Siavash; Aberer, Andre J.; Li, Bo; Houde, Peter; Li, Cai; Ho, Simon Y. W.; Faircloth, Brant C.; Nabholz, Benoit; Howard, Jason T.; Suh, Alexander; Weber, Claudia C.; Fonseca, Rute R. da; Li, Jianwen; Zhang, Fang; Li, Hui; Zhou, Long; Narula, Nitish; Liu, Liang; Ganapathy, Ganesh; Boussau, Bastien; Bayzid, Md Shamsuzzoha; Zavidovych, Volodymyr; Subramanian, Sankar; Gabaldón, Toni; Capella-Gutiérrez, Salvador; Huerta-Cepas, Jaime; Rekepalli, Bhanu; Munch, Kasper; Schierup, Mikkel; Lindow, Bent; Warren, Wesley C.; Ray, David; Green, Richard E.; Bruford, Michael W.; Zhan, Xiangjiang; Dixon, Andrew; Li, Shengbin; Li, Ning; Huang, Yinhua; Derryberry, Elizabeth P.; Bertelsen, Mads Frost; Sheldon, Frederick H.; Brumfield, Robb T.; Mello, Claudio V.; Lovell, Peter V.; Wirthlin, Morgan; Schneider, Maria Paula Cruz; Prosdocimi, Francisco; Samaniego, José Alfredo; Velazquez, Amhed Missael Vargas; Alfaro-Núñez, Alonzo; Campos, Paula F.; Petersen, Bent; Sicheritz-Ponten, Thomas; Pas, An; Bailey, Tom; Scofield, Paul; Bunce, Michael; Lambert, David M.; Zhou, Qi; Perelman, Polina; Driskell, Amy C.; Shapiro, Beth; Xiong, Zijun; Zeng, Yongli; Liu, Shiping; Li, Zhenyu; Liu, Binghang; Wu, Kui; Xiao, Jin; Yinqi, Xiong; Zheng, Qiuemei; Zhang, Yong; Yang, Huanming; Wang, Jian; Smeds, Linnea; Rheindt, Frank E.; Braun, Michael J.; Fjeldsa, Jon; Orlando, Ludovic; Barker, F. K.; Jønsson, Knud Andreas; Johnson, Warren E.; Koepfli, Klaus-Peter; O'Brien, Stephen; Haussler, David; Ryder, Oliver A.; Rahbek, Carsten; Willerslev, Eske; Graves, Gary R.; Glenn, Travis C.; McCormack, John; Burt, Dave; Ellegren, Hans; Alström, Per; Edwards, Scott V.; Stamatakis, Alexandros; Mindell, David P.; Cracraft, Joel; Braun, Edward L.; Warnow, Tandy; Jun, Wang; Gilbert, M. T.; Zhang, Guojie (2014)
    To better determine the history of modern birds, we performed a genome-scale phylogenetic analysis of 48 species representing all orders of Neoaves using phylogenomic methods created to handle genome-scale data. We recovered ...

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