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Browsing by Author "O'Brien, Stephen J."

Browsing by Author "O'Brien, Stephen J."

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  • Comparative genomics reveals insights into avian genome evolution and adaptation 
    Zhang, Guojie; Li, Cai; Li, Qiye; Li, Bo; Larkin, Denis M.; Lee, Chul; Storz, Jay F.; Antunes, Agostinho; Greenwold, Matthew J.; Meredith, Robert W.; Ödeen, Anders; Cui, Jie; Zhou, Qi; Xu, Luohao; Pan, Hailin; Wang, Zongji; Jin, Lijun; Zhang, Pei; Hu, Haofu; Yang, Wei; Hu, Jiang; Xiao, Jin; Yang, Zhikai; Liu, Yang; Xie, Qiaolin; Yu, Hao; Lian, Jinmin; Wen, Ping; Zhang, Fang; Li, Hui; Zeng, Yongli; Xiong, Zijun; Liu, Shiping; Zhou, Long; Huang, Zhiyong; An, Na; Wang, Jie; Zheng, Qiumei; Xiong, Yingqi; Wang, Guangbiao; Wang, Bo; Wang, Jingjing; Fan, Yu; Fonseca, Rute R. da; Alfaro-Núñez, Alonzo; Schubert, Mikkel; Orlando, Ludovic; Mourier, Tobias; Howard, Jason T.; Ganapathy, Ganeshkumar; Pfenning, Andreas; Whitney, Osceola; Rivas, Miriam V.; Hara, Erina; Smith, Julia; Farré, Marta; Narayan, Jitendra; Slavov, Gancho; Romanov, Michael N.; Borges, Rui; Machado, João Paulo; Khan, Imran; Springer, Mark S.; Gatesy, John; Hoffmann, Federico G.; Opazo, Juan C.; Håstad, Olle; Sawyer, Roger H.; Kim, Heebal; Kim, Kyu-Won; Kim, Hyeon Jeong; Cho, Seoae; Li, Ning; Huang, Yinhua; Bruford, Michael W.; Zhan, Xiangjiang; Dixon, Andrew; Bertelsen, Mads F.; Derryberry, Elizabeth P.; Warren, Wesley; Wilson, Richard K.; Li, Shengbin; Ray, David A.; Green, Richard E.; O'Brien, Stephen J.; Griffin, Darren; Johnson, Warren E.; Haussler, David; Ryder, Oliver A.; Willerslev, Eske; Graves, Gary R.; Alström, Per; Fjeldså, Jon; Mindell, David P.; Edwards, Scott V.; Braun, Edward L.; Rahbek, Carsten; Burt, David W.; Houde, Peter; Zhang, Yong; Yang, Huanming; Wang, Jian; Jarvis, Erich D.; Gilbert, M. T.; Wang, Jun; Ye, Chen; Liang, Shaoguang; Yan, Zengli; Zepeda, M. L.; Campos, Paula F.; Velazquez, Amhed Missael Vargas; Samaniego, José Alfredo; Avila-Arcos, Mar; Martin, Michael D.; Barnett, Ross; Ribeiro, Angela M.; Mello, Claudio V.; Lovell, Peter V.; Almeida, Daniela; Maldonado, Emanuel; Pereira, Joana; Sunagar, Kartik; Philip, Siby; Dominguez-Bello, Maria; Bunce, Michael; Lambert, David; Brumfield, Robb T.; Sheldon, Frederick H.; Holmes, Edward C.; Gardner, Paul P.; Steeves, Tammy E.; Stadler, Peter F.; Burge, Sarah W.; Lyons, Eric; Smith, Jacqueline; McCarthy, Fiona; Pitel, Frederique; Rhoads, Douglas; Froman, David P. (2014)
    Birds are the most species-rich class of tetrapod vertebrates and have wide relevance across many research fields. We explored bird macroevolution using full genomes from 48 avian species representing all major extant ...
  • The Dynamic Proliferation of CanSINEs Mirrors the Complex Evolution of Feliforms 
    Walters-Conte, Kathryn; Le Johnson, Diana; Johnson, Warren E.; O'Brien, Stephen J.; Pecon-Slattery, Jill (2014)
    Repetitive short interspersed elements (SINEs) are retrotransposons ubiquitous in mammalian genomes and are highly informative markers to identify species and phylogenetic associations. Of these, SINEs unique to the order ...
  • Evolutionary genomics and adaptive evolution of the hedgehog gene family (<I>S</I>hh, <I>Ihh </I>and <I>Dhh</I>) in vertebrates 
    Pereira, Joana; Johnson, Warren E.; O'Brien, Stephen J.; Jarvis, Erich D.; Zhang, Guojie; Gilbert, M. T.; Vasconcelos, Vitor; Antunes, Agostinho (2014)
    The Hedgehog (Hh) gene family codes for a class of secreted proteins composed of two active domains that act as signalling molecules during embryo development, namely for the development of the nervous and skeletal systems ...
  • Genetic Monitors of Zoo Populations: Morphological and Electrophoretic Assays 
    Wayne, Robert K.; Forman, Lisa; Newman, A. K.; Simonson, J. M.; O'Brien, Stephen J. (1986)
  • Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species 
    Haussler, David; O'Brien, Stephen J.; Ryder, Oliver A.; Barker, F. Keith; Clamp, Michele; Crawford, Andrew J.; Hanner, Robert; Hanotte, Olivier; McGuire, Jimmy A.; Miller, Webb; Murphy, Robert W.; Murphy, William J.; Sheldon, Frederick H.; Sinervo, Barry; Venkatesh, Byrappa; Wiley, Edward O.; Allendorf, Fred W.; Amato, George; Baker, C. Scott; Bauer, Aaron; Beja-Pereira, Albano; Bermingham, Eldredge; Bernardi, Giacomo; Bonvicino, Cibele R.; Brenner, Sydney; Burke, Terry; Cracraft, Joel; Diekhans, Mark; Edwards, Scott; Ericson, Per G. P.; Estes, James; Fjelsda, Jon; Flesness, Nate; Gamble, Tony; Gaubert, Philippe; Graphodatsky, Alexander S.; Graves, Jennifer A. Marshall; Green, Eric D.; Green, Richard E.; Hackett, Shannon; Hebert, Paul; Helgen, Kristofer M.; Joseph, Leo; Kessing, Bailey; Kingsley, David M.; Lewin, Harris A.; Luikart, Gordon; Martelli, Paolo; Moreira, Miguel A. M.; Nguyen, Ngan; Orti, Guillermo; Pike, Brian L.; Rawson, David Michael; Schuster, Stephan C.; Seuanez, Hector N.; Shaffer, H. Bradley; Springer, Mark S.; Stuart, Joshua Michael; Sumner, Joanna; Teeling, Emma; Vrijenhoek, Robert C.; Ward, Robert D.; Warren, Wesley C.; Wayne, Robert K.; Williams, Terrie M.; Wolfe, Nathan D.; Zhang, Ya-Ping; Graph-Odatsky, Alexander; Johnson, Warren E.; Felsenfeld, Adam; Turner, S. C. (2009)
    The human genome project has been recently complemented by whole-genome assessment sequence of 32 mammals and 24 nonmammalian vertebrate species suitable for comparative genomic analyses. Here we anticipate a precipitous ...
  • The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes 
    Bracken-Grissom, Heather; Collins, Allen Gilbert; Collins, Timothy; Crandall, Keith; Distel, Daniel; Dunn, Casey; Giribet, Gonzalo; Haddock, Steven; Knowlton, Nancy; Martindale, Mark; Medina, Monica; Messing, Charles; O'Brien, Stephen J.; Paulay, Gustav; Putnam, Nicolas; Ravasi, Timothy; Rouse, Greg W.; Ryan, Joseph F.; Schulze, Anja; Worheide, Gert; Adamska, Maja; Bailly, Xavier; Breinholt, Jesse; Browne, William E.; Diaz, M. Christina; Evans, Nathaniel M.; Flot, Jean-Francois; Fogarty, Nicole; Johnston, Matthew; Kamel, Bishoy; Kawahara, Akito Y.; Laberge, Tammy; Lavrov, Dennis; Michonneau, Francois; Moroz, Leonid L.; Oakley, Todd; Osborn, Karen J.; Pomponi, Shirley A.; Rhodes, Adelaide; Rodriguez-Lanetty, Mauricio; Santos, Scott R.; Satoh, Nori; Thacker, Robert W.; Van de Peer, Yves; Voolstra, Christian R.; Welch, David Mark; Winston, Judith; Zhou, Xin (2014)
    Over 95% of all metazoan (animal) species comprise the invertebrates, but very few genomes from these organisms have been sequenced. We have, therefore, formed a Global Invertebrate Genomics Alliance (GIGA). Our intent is ...
  • Mammalian keratin associated proteins (KRTAPs) subgenomes: disentangling hair diversity and adaptation to terrestrial and aquatic environments 
    Khan, Imran; Maldonado, Emanuel; Vasconcelos, Vitor; O'Brien, Stephen J.; Johnson, Warren E.; Antunes, Agostinho (2014)
    Background: Adaptation of mammals to terrestrial life was facilitated by the unique vertebrate trait of body hair, which occurs in a range of morphological patterns. Keratin associated proteins (KRTAPs), the major structural ...
  • Sympatric Asian Felid Phylogeography Reveals A Major Indochinese-Sundaic Divergence 
    Luo, Shu-Jin; Zhang, Yue; Johnson, Warren E.; Miao, Lin; Martelli, Paolo; Antunes, Agostinho; Smith, James L. D.; O'Brien, Stephen J. (2014)
    The dynamic geological and climatological history of Southeast Asia has spawned a complex array of ecosystems and 12 of the 37 cat species, making it the most felid-rich region in the world. To examine evolutionary histories ...
  • Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations 
    Koepfli, Klaus-Peter; Tamazian, Gaik; Wildt, David E.; Dobrynin, Pavel; Kim, Changhoon; Frandsen, Paul B.; Godinho, Raquel; Yurchenko, Andrey A.; Komissarov, Aleksey; Krasheninnikova, Ksenia; Kliver, Sergei; Kolchanova, Sofia; Gonçalves, Margarida; Carneiro, Miguel; Vaz Pinto, Pedro; Ferrand, Nuno; Maldonado, Jesús E.; Ferrie, Gina M.; Chemnick, Leona; Ryder, Oliver A.; Johnson, Warren E.; Comizzoli, Pierre; O'Brien, Stephen J.; Pukazhenthi, Budhan S. (2019)
    Genome-wide assessment of genetic diversity has the potential to increase the ability to understand admixture, inbreeding, kinship and erosion of genetic diversity affecting both captive (ex situ) and wild (in situ) ...

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