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Browsing by Author "Gilbert, M. Thomas P."

Browsing by Author "Gilbert, M. Thomas P."

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  • The ancestry and geographical origins of St Helena's liberated Africans 
    Sandoval-Velasco, Marcela; Jagadeesan, Anuradha; Ramos-Madrigal, Jazmín; Ávila-Arcos, María C.; Fortes-Lima, Cesar A.; Watson, Judy; Johannesdóttir, Erna; Cruz-Dávalos, Diana I.; Gopalakrishnan, Shyam; Moreno-Mayar, J. Víctor; Niemann, Jonas; Renaud, Gabriel; Robson Brown, Katharine A.; Bennett, Helena; Pearson, Andrew; Helgason, Agnar; Gilbert, M. Thomas P.; Schroeder, Hannes (2023)
    The island of St Helena played a crucial role in the suppression of the transatlantic slave trade. Strategically located in the middle of the South Atlantic, it served as a staging post for the Royal Navy and reception ...
  • Critical review of host specificity and its coevolutionary implications in the fig/fig-wasp mutualism 
    Machado, Carlos A.; Robbins, Nancy; Gilbert, M. Thomas P.; Herre, Edward Allen (2005)
  • Current perspectives and the future of domestication studies 
    Larson, Greger; Piperno, Dolores R.; Allaby, Robin G.; Purugganan, Michael D.; Andersson, Leif; Arroyo-Kalin, Manuel; Barton, Loukas; Vigueira, Cynthia Climer; Denham, Tim; Dobney, Keith; Doust, Andrew N.; Gepts, Paul; Gilbert, M. Thomas P.; Gremillion, Kristen J.; Lucas, Leilani; Lukens, Lewis; Marshall, Fiona B.; Olsen, Kenneth M.; Pires, J. C.; Richerson, Peter J.; de Casas, Rafael Rubio; Sanjur, Oris I.; Thomas, Mark G.; Fuller, Dorian Q. (2014)
    It is difficult to overstate the cultural and biological impacts that the domestication of plants and animals has had on our species. Fundamental questions regarding where, when, and how many times domestication took place ...
  • Earth BioGenome Project: Sequencing life for the future of life 
    Lewin, Harris A.; Robinson, Gene E.; Kress, W. John; Baker, William J.; Coddington, Jonathan; Crandall, Keith A.; Durbin, Richard; Edwards, Scott V.; Forest, Felix; Gilbert, M. Thomas P.; Goldstein, Melissa M.; Grigoriev, Igor V.; Hackett, Kevin J.; Haussler, David; Jarvis, Erich D.; Johnson, Warren E.; Patrinos, Aristides; Richards, Stephen; Castilla-Rubio, Juan Carlos; van Sluys, Marie-Anne; Soltis, Pamela S.; Xu, Xun; Yang, Huanming; Zhang, Guojie (2018)
    Increasing our understanding of Earth's biodiversity and responsibly stewarding its resources are among the most crucial scientific and social challenges of the new millennium. These challenges require fundamental new ...
  • The evolutionary history of extinct and living lions 
    de Manuel, Marc; Barnett, Ross; Sandoval-Velasco, Marcela; Yamaguchi, Nobuyuki; Vieira, Filipe Garrett; Mendoza, M. Lisandra Zepeda; Liu, Shiping; Martin, Michael D.; Sinding, Mikkel-Holger S.; Mak, Sarah S. T.; Caroe, Christian; Liu, Shanlin; Guo, Chunxue; Zheng, Jiao; Zazula, Grant; Baryshnikov, Gennady; Eizirik, Eduardo; Koepfli, Klaus-Peter; Johnson, Warren E.; Antunes, Agostinho; Sicheritz-Ponten, Thomas; Gopalakrishnan, Shyam; Larson, Greger; Yang, Huanming; O'Brien, Stephen J.; Hansen, Anders J.; Zhang, Guojie; Marques-Bonet, Tomas; Gilbert, M. Thomas P. (2020)
    Lions are one of the world's most iconic megafauna, yet little is known about their temporal and spatial demographic history and population differentiation. We analyzed a genomic dataset of 20 specimens: two ca. ...
  • Genome Sequence of a 5,310-Year-Old Maize Cob Provides Insights into the Early Stages of Maize Domestication 
    Ramos-Madrigal, Jazm; Smith, Bruce D.; Moreno-Mayar, J. Victor; Gopalakrishnan, Shyam; Ross-Ibarra, Jeffrey; Gilbert, M. Thomas P.; Wales, Nathan (2016)
    The complex evolutionary history of maize (Zea mays L. ssp. mays) has been clarified with genomic-level data from modern landraces and wild teosinte grasses 1, 2], augmenting archaeological findings that suggest domestication ...
  • Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, <I>Homotherium latidens</I> 
    Barnett, Ross; Westbury, Michael V.; Sandoval-Velasco, Marcela; Vieira, Filipe Garrett; Jeon, Sungwon; Zazula, Grant; Martin, Michael D.; Ho, Simon Y. W.; Mather, Niklas; Gopalakrishnan, Shyam; Ramos-Madrigal, Jazmin; de Manuel, Marc; Zepeda-Mendoza, M. Lisandra; Antunes, Agostinho; Baez, Aldo Carmona; De Cahsan, Binia; Larson, Greger; O'Brien, Stephen J.; Eizirik, Eduardo; Johnson, Warren E.; Koepfli, Klaus-Peter; Wilting, Andreas; Fickel, Jorns; Dalen, Love; Lorenzen, Eline D.; Marques-Bonet, Tomas; Hansen, Anders J.; Zhang, Guojie; Bhak, Jong; Yamaguchi, Nobuyuki; Gilbert, M. Thomas P. (2020)
    Homotherium was a genus of large-bodied scimitar-toothed cats, morphologically distinct from any extant felid species, that went extinct at the end of the Pleistocene [1-4]. They possessed large, saber-form serrated canine ...
  • The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus) 
    Miller, Webb; Drautz, Daniela I.; Janecka, Jan E.; Lesk, Arthur M.; Ratan, Aakrosh; Tomsho, Lynn P.; Packard, Mike; Zhang, Yeting; McClellan, Lindsay R.; Qi, Ji; Zhao, Fangqing; Gilbert, M. Thomas P.; Dalen, Love; Arsuaga, Juan Luis; Ericson, Per G. P.; Huson, Daniel H.; Helgen, Kristofer M.; Murphy, William J.; Gotherstrom, Anders; Schuster, Stephan C. (2009)
    We report the first two complete mitochondrial genome sequences of the thylacine (Thylacinus cynocephalus), or so-called Tasmanian tiger, extinct since 1936. The thylacine&#39;s phylogenetic position within australidelphian ...
  • Multiproxy evidence highlights a complex evolutionary legacy of maize in South America 
    Kistler, Logan; Maezumi, S. Yodhi; Gregorio de Souza. Jonas; Przelomska, Natalia A. S.; Malaquias Costa, Flaviane; Smith, Oliver; Loiselle, Hope; Ramos-Madrigal, Jazm; Wales, Nathan; Ribeiro, Eduardo Rivail; Morrison, Ryan R.; Grimaldo, Claudia; Prous, Andre P.; Arriaza, Bernardo; Gilbert, M. Thomas P.; de Oliveira Freitas, Fabio; Allaby, Robin G. (2018)
  • One Hundred Twenty Years of Koala Retrovirus Evolution Determined from Museum Skins 
    Ávila-Arcos, María C.; Ho, Simon Y. W.; Ishida, Yasuko; Nikolaidis, Nikolas; Tsangaras, Kyriakos; Honig, Karin; Medina, Rebeca; Rasmussen, Morten; Fordyce, Sarah L.; Calvignac-Spencer, Sébastien; Willerslev, Eske; Gilbert, M. Thomas P.; Helgen, Kristofer M.; Roca, Alfred L.; Greenwood, Alex D. (2012)
  • Phylogenomics of the world&#39;s otters 
    de Ferran, Vera; Figueiró, Henrique Vieira; Trindade, Fernanda de Jesus; Smith, Oliver; Sinding, Mikkel-Holger S.; Trinca, Cristine S.; Lazzari, Gabriele Zenato; Veron, Géraldine; Vianna, Juliana A.; Barbanera, Filippo; Kliver, Sergei; Serdyukova, Natalia; Bulyonkova, Tatiana; Ryder, Oliver A.; Gilbert, M. Thomas P.; Koepfli, Klaus-Peter; Eizirik, Eduardo (2022)
    Comparative whole-genome analyses hold great power to illuminate commonalities and differences in the evolution of related species that share similar ecologies. The mustelid subfamily Lutrinae includes 13 currently recognized ...
  • Species-specific responses of Late Quaternary megafauna to climate and humans 
    Lorenzen, Eline D.; Nogues-Bravo, David; Orlando, Ludovic; Weinstock, Jaco; Binladen, Jonas; Marske, Katharine A.; Ugan, Andrew; Borregaard, Michael K.; Gilbert, M. Thomas P.; Nielsen, Rasmus; Ho, Simon Y. W.; Goebel, Ted; Graf, Kelly E.; Byers, David; Stenderup, Jesper T.; Rasmussen, Morten; Campos, Paula F.; Leonard, Jennifer A.; Koepfli, Klaus-Peter; Froese, Duane; Zazula, Grant; Stafford, Jr, Thomas W.; Aaris-Sørensen, Kim; Batra, Persaram; Haywood, Alan M.; Singarayer, Joy S.; Valdes, Paul J.; Boeskorov, Gennady; Burns, James A.; Davydov, Sergey P.; Haile, James; Jenkins, Dennis L.; Kosintsev, Pavel; Kuznetsova, Tatyana; Lai, Xulong; Martin, Larry D.; McDonald, H. Gregory; Mol, Dick; Meldgaard, Morten; Munch, Kasper; Stephan, Elisabeth; Sablin, Mikhail; Sommer, Robert S.; Sipko, Taras; Scott, Eric; Suchard, Marc A.; Tikhonov, Alexei; Willerslev, Rane; Wayne, Robert K.; Cooper, Alan; Hofreiter, Michael; Sher, Andrei; Shapiro, Beth; Rahbek, Carsten; Willerslev, Eske (2011)
    Despite decades of research, the roles of climate and humans in driving the dramatic extinctions of large-bodied mammals during the Late Quaternary period remain contentious. Here we use ancient DNA, species distribution ...
  • Towards complete and error-free genome assemblies of all vertebrate species 
    Rhie, Arang; McCarthy, Shane A.; Fedrigo, Olivier; Damas, Joana; Formenti, Giulio; Koren, Sergey; Uliano-Silva, Marcela; Chow, William; Fungtammasan, Arkarachai; Kim, Juwan; Lee, Chul; Ko, Byung June; Chaisson, Mark; Gedman, Gregory L.; Cantin, Lindsey J.; Thibaud-Nissen, Francoise; Haggerty, Leanne; Bista, Iliana; Smith, Michelle; Haase, Bettina; Mountcastle, Jacquelyn; Winkler, Sylke; Paez, Sadye; Howard, Jason; Vernes, Sonja C.; Lama, Tanya M.; Grutzner, Frank; Warren, Wesley C.; Balakrishnan, Christopher N.; Burt, Dave; George, Julia M.; Biegler, Matthew T.; Iorns, David; Digby, Andrew; Eason, Daryl; Robertson, Bruce; Edwards, Taylor; Wilkinson, Mark; Turner, George; Meyer, Axel; Kautt, Andreas F.; Franchini, Paolo; Detrich, H. William; Svardal, Hannes; Wagner, Maximilian; Naylor, Gavin J. P.; Pippel, Martin; Malinsky, Milan; Mooney, Mark; Simbirsky, Maria; Hannigan, Brett T.; Pesout, Trevor; Houck, Marlys; Misuraca, Ann; Kingan, Sarah B.; Hall, Richard; Kronenberg, Zev; Sovi, Ivan; Dunn, Christopher; Ning, Zemin; Hastie, Alex; Lee, Joyce; Selvaraj, Siddarth; Green, Richard E.; Putnam, Nicholas H.; Gut, Ivo; Ghurye, Jay; Garrison, Erik; Sims, Ying; Collins, Joanna; Pelan, Sarah; Torrance, James; Tracey, Alan; Wood, Jonathan; Dagnew, Robel E.; Guan, Dengfeng; London, Sarah E.; Clayton, David F.; Mello, Claudio, V.; Friedrich, Samantha R.; Lovell, Peter, V.; Osipova, Ekaterina; Al-Ajli, Farooq O.; Secomandi, Simona; Kim, Heebal; Theofanopoulou, Constantina; Hiller, Michael; Zhou, Yang; Harris, Robert S.; Makova, Kateryna D.; Medvedev, Paul; Hoffman, Jinna; Masterson, Patrick; Clark, Karen; Martin, Fergal; Howe, Kevin; Flicek, Paul; Walenz, Brian P.; Kwak, Woori; Clawson, Hiram; Diekhans, Mark; Nassar, Luis; Paten, Benedict; Kraus, Robert H. S.; Crawford, Andrew J.; Gilbert, M. Thomas P.; Zhang, Guojie; Venkatesh, Byrappa; Murphy, Robert W.; Koepfli, Klaus-Peter; Shapiro, Beth; Johnson, Warren E.; Di Palma, Federica; Marques-Bonet, Tomas; Teeling, Emma C.; Warnow, Tandy; Graves, Jennifer Marshall; Ryder, Oliver A.; Haussler, David; O'Brien, Stephen J.; Korlach, Jonas; Lewin, Harris A.; Howe, Kerstin; Myers, Eugene W.; Durbin, Richard; Phillippy, Adam M.; Jarvis, Erich D. (2021)
    The Vertebrate Genome Project has used an optimized pipeline to generate high-quality genome assemblies for sixteen species (representing all major vertebrate classes), which have led to new biological insights. High-quality ...
  • The Vertebrate TLR Supergene Family Evolved Dynamically by Gene Gain/Loss and Positive Selection Revealing a Host-Pathogen Arms Race in Birds 
    Khan, Imran; Maldonado, Emanuel; Silva, Liliana; Almeida, Daniela; Johnson, Warren E.; O'Brien, Stephen J.; Zhang, Guojie; Jarvis, Erich D.; Gilbert, M. Thomas P.; Antunes, Agostinho (2019)
    The vertebrate toll-like receptor (TLRs) supergene family is a first-line immune defense against viral and non-viral pathogens. Here, comparative evolutionary-genomics of 79 vertebrate species (8 mammals, 48 birds, 11 ...

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