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Browsing by Author "Faircloth, Brant C."

Browsing by Author "Faircloth, Brant C."

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  • Glenn, Travis C.; Pierson, Todd W.; Bayona-Vásquez, Natalia J.; Kieran, Troy J.; Hoffberg, Sandra L.; Thomas Iv, Jesse C.; Lefever, Daniel E.; Finger, John W.; Gao, Bei; Bian, Xiaoming; Louha, Swarnali; Kolli, Ramya T.; Bentley, Kerin E.; Rushmore, Julie; Wong, Kelvin; Shaw, Timothy I.; Rothrock, Michael J.; McKee, Anna M.; Guo, Tai L.; Mauricio, Rodney; Molina, Marirosa; Cummings, Brian S.; Lash, Lawrence H.; Lu, Kun; Gilbert, Gregory S.; Hubbell, Stephen P.; Faircloth, Brant C. (2019)
    Next-generation sequencing (NGS) of amplicons is used in a wide variety of contexts. In many cases, NGS amplicon sequencing remains overly expensive and inflexible, with library preparation strategies relying upon the ...
  • Feng, Shaohong; Stiller, Josefin; Deng, Yuan; Armstrong, Joel; Fang, Qi; Reeve, Andrew Hart; Xie, Duo; Chen, Guangji; Guo, Chunxue; Faircloth, Brant C.; Petersen, Bent; Wang, Zongji; Zhou, Qi; Diekhans, Mark; Chen, Wanjun; Andreu-Sánchez, Sergio; Margaryan, Ashot; Howard, Jason Travis; Parent, Carole; Pacheco, George; Sinding, Mikkel-Holger S.; Puetz, Lara; Cavill, Emily; Ribeiro, Ângela M.; Eckhart, Leopold; Fjeldså, Jon; Hosner, Peter A.; Brumfield, Robb T.; Christidis, Les; Bertelsen, Mads F.; Sicheritz-Ponten, Thomas; Tietze, Dieter Thomas; Robertson, Bruce C.; Song, Gang; Borgia, Gerald; Claramunt, Santiago; Lovette, Irby J.; Cowen, Saul J.; Njoroge, Peter; Dumbacher, John Philip; Ryder, Oliver A.; Fuchs, Jérôme; Bunce, Michael; Burt, David W.; Cracraft, Joel; Meng, Guanliang; Hackett, Shannon J.; Ryan, Peter G.; Jønsson, Knud Andreas; Jamieson, Ian G.; da Fonseca, Rute R.; Braun, Edward L.; Houde, Peter; Mirarab, Siavash; Suh, Alexander; Hansson, Bengt; Ponnikas, Suvi; Sigeman, Hanna; Stervander, Martin; Frandsen, Paul B.; van der Zwan, Henriette; van der Sluis, Rencia; Visser, Carina; Balakrishnan, Christopher N.; Clark, Andrew G.; Fitzpatrick, John W.; Bowman, Reed; Chen, Nancy; Cloutier, Alison; Sackton, Timothy B.; Edwards, Scott V.; Foote, Dustin J.; Shakya, Subir B.; Sheldon, Frederick H.; Vignal, Alain; Soares, André E. R.; Shapiro, Beth; González-Solís, Jacob; Ferrer-Obiol, Joan; Rozas, Julio; Riutort, Marta; Tigano, Anna; Friesen, Vicki; Dalén, Love; Urrutia, Araxi O.; Székely, Tamás; Liu, Yang; Campana, Michael G.; Corvelo, André; Fleischer, Robert C.; Rutherford, Kim M.; Gemmell, Neil J.; Dussex, Nicolas; Mouritsen, Henrik; Thiele, Nadine; Delmore, Kira; Liedvogel, Miriam; Franke, Andre; Hoeppner, Marc P.; Krone, Oliver; Fudickar, Adam M.; Milá, Borja; Ketterson, Ellen D.; Fidler, Andrew Eric; Friis, Guillermo; Parody-Merino, Ángela M.; Battley, Phil F.; Cox, Murray P.; Lima, Nicholas Costa Barroso; Prosdocimi, Francisco; Parchman, Thomas Lee; Schlinger, Barney A.; Loiselle, Bette A.; Blake, John G.; Lim, Haw Chuan; Day, Lainy B.; Fuxjager, Matthew J.; Baldwin, Maude W.; Braun, Michael J.; Wirthlin, Morgan; Dikow, Rebecca B.; Ryder, T. B.; Camenisch, Glauco; Keller, Lukas F.; DaCosta, Jeffrey M.; Hauber, Mark E.; Louder, Matthew I. M.; Witt, Christopher C.; McGuire, Jimmy A.; Mudge, Joann; Megna, Libby C.; Carling, Matthew D.; Wang, Biao; Taylor, Scott A.; Del-Rio, Glaucia; Aleixo, Alexandre; Vasconcelos, Ana Tereza Ribeiro; Mello, Claudio V.; Weir, Jason T.; Haussler, David; Li, Qiye; Yang, Huanming; Wang, Jian; Lei, Fumin; Rahbek, Carsten; Gilbert, M. T.; Graves, Gary R.; Jarvis, Erich D.; Paten, Benedict; Zhang, Guojie (2020)
    Whole-genome sequencing projects are increasingly populating the tree of life and characterizing biodiversity1–4. Sparse taxon sampling has previously been proposed to confound phylogenetic inference5, and captures only a ...
  • Kusumi, Kenro; Kulathinal, Rob J.; Abzhanov, Arhat; Boissinot, Stephane; Crawford, Nicholas G.; Faircloth, Brant C.; Glenn, Travis C.; Janes, Daniel E.; Losos, Jonathan B.; Menke, Douglas B.; Poe, Steven; Sanger, Thomas J.; Schneider, Christopher J.; Stapley, Jessica; Wade, Juli; Wilson-Rawls, Jeanne (2011)
    Background: Comparative studies of amniotes have been hindered by a dearth of reptilian molecular sequences. With the genomic assembly of the green anole, Anolis carolinensis available, non-avian reptilian genes can now ...
  • Branstetter, Michael G.; Ješovnik, Ana; Sosa-Calvo, Jeffrey; Lloyd, Michael W.; Faircloth, Brant C.; Brady, Seán G.; Schultz, Ted R. (2017)
    The evolution of ant agriculture, as practised by the fungus-farming 'attine' ants, is thought to have arisen in the wet rainforests of South America about 55-65 Ma. Most subsequent attine agricultural evolution, ...
  • Oliveros, Carl H.; Field, Daniel J.; Ksepka, Daniel T.; Barker, F. K.; Aleixo, Alexandre; Andersen, Michael J.; Alström, Per; Benz, Brett W.; Braun, Edward L.; Braun, Michael J.; Bravo, Gustavo A.; Brumfield, Robb T.; Chesser, R. Terry; Claramunt, Santiago; Cracraft, Joel; Cuervo, Andrés M.; Derryberry, Elizabeth P.; Glenn, Travis C.; Harvey, Michael G.; Hosner, Peter A.; Joseph, Leo; Kimball, Rebecca T.; Mack, Andrew L.; Miskelly, Colin M.; Peterson, A. T.; Robbins, Mark B.; Sheldon, Frederick H.; Silveira, Luís Fábio; Smith, Brian Tilston; White, Noor D.; Moyle, Robert G.; Faircloth, Brant C. (2019)
    Avian diversification has been influenced by global climate change, plate tectonic movements, and mass extinction events. However, the impact of these factors on the diversification of the hyperdiverse perching birds ...
  • Faircloth, Brant C.; Title, Alexandra; Tan, Kevin; Welty, Justin; Belthoff, James R.; Gowaty, Patricia Adair (2010)
    Western burrowing owls (Athene cunicularia hypugaea) are ground-dwelling owls distributed throughout western North America. Because of population declines, this species is considered endangered in Canada, and burrowing ...
  • Branstetter, Michael G.; Longino, John T.; Ward, Philip S.; Faircloth, Brant C. (2017)
    * Targeted enrichment of conserved genomic regions (e.g. ultraconserved elements or UCEs) has emerged as a promising tool for inferring evolutionary history in many organismal groups. Because the UCE approach is still ...
  • Harvey, Michael G.; Bravo, Gustavo A.; Claramunt, Santiago; Cuervo, Andrés M.; Derryberry, Graham E.; Battilana, Jaqueline; Seeholzer, Glenn F.; McKay, Jessica Shearer; O'Meara, Brian C.; Faircloth, Brant C.; Edwards, Scott V.; Pérez-Emán, Jorge; Moyle, Robert G.; Sheldon, Frederick H.; Aleixo, Alexandre; Smith, Brian Tilston; Chesser, R. T.; Silveira, Luís Fábio; Cracraft, Joel; Brumfield, Robb T.; Derryberry, Elizabeth P. (2020)
    The tropics are the source of most biodiversity yet inadequate sampling obscures answers to fundamental questions about how this diversity evolves. We leveraged samples assembled over decades of fieldwork to study ...
  • Ramos, Alejandra G.; Nunziata, Schyler O.; Lance, Stacey L.; Rodríguez, Cristina; Faircloth, Brant C.; Gowaty, Patricia Adair; Drummond, Hugh (2014)
    Individual variation in sexual fidelity and extrapair paternity (EPP) is widely attributed to environmental heterogeneity, but the only variables known to be influential are food abundance and density of conspecific breeders ...
  • Ramos, Alejandra G.; Nunziata, Schyler O.; Lance, Stacey L.; Rodriguez, Cristina; Faircloth, Brant C.; Gowaty, Patricia A.; Drummond, Hugh (2014)
  • Quattrini, Andrea M.; Rodríguez, Estefanía; Faircloth, Brant C.; Cowman, Peter F.; Brugler, Mercer R.; Farfan, Gabriela A.; Hellberg, Michael E.; Kitahara, Marcelo V.; Morrison, Cheryl L.; Paz-García, David A.; Reimer, James D.; McFadden, Catherine S. (2020)
  • Branstetter, Michael G.; Danforth, Bryan N.; Pitts, James P.; Faircloth, Brant C.; Ward, Philip S.; Buffington, Matthew L.; Gates, Michael W.; Kula, Robert R.; Brady, Seán Gary (2017)
    Summary The stinging wasps (Hymenoptera: Aculeata) are an extremely diverse lineage of hymenopteran insects, encompassing over 70,000 described species and a diversity of life history traits, including ectoparasitism, ...
  • Kimball, Rebecca T.; Oliveros, Carl H.; Wang, Ning; White, Noor D.; Barker, F. Keith; Field, Daniel J.; Ksepka, Daniel T.; Chesser, R. Terry; Moyle, Robert G.; Braun, Michael J.; Brumfield, Robb T.; Faircloth, Brant C.; Smith, Brian Tilston; Braun, Edward L. (2019)
    It has long been appreciated that analyses of genomic data (e.g., whole genome sequencing or sequence capture) have the potential to reveal the tree of life, but it remains challenging to move from sequence data to a clear ...
  • Castrezana, Sergio; Faircloth, Brant C.; Bridges, William C.; Gowaty, Patricia Adair (2017)
    A prominent hypothesis for polyandry says that male-male competitive drivers induce males to coerce already-mated females to copulate, suggesting that females are more likely to be harassed in the presence of multiple ...
  • Barberán, Albert; McGuire, Krista L.; Wolf, Jeffrey A.; Jones, F. Andrew; Wright, S. Joseph; Turner, Benjamin L.; Essene, Adam; Hubbell, Stephen P.; Faircloth, Brant C.; Fierer, Noah (2015)
    The complexities of the relationships between plant and soil microbial communities remain unresolved. We determined the associations between plant aboveground and belowground (root) distributions and the communities of ...
  • Buckner, Janet C.; Sanders, Robert C.; Faircloth, Brant C.; Chakrabarty, Prosanta (2021)
    A voucher is a permanently preserved specimen that is maintained in an accessible collection. In genomics, vouchers serve as the physical evidence for the taxonomic identification of genome assemblies. Unfortunately, the ...
  • St John, John A.; Braun, Edward L.; Isberg, Sally R.; Miles, Lee G.; Chong, Amanda Y.; Gongora, Jaime; Dalzell, Pauline; Moran, Christopher; Bed'Hom, Bertrand; Abzhanov, Arhat; Burguess, Shane C.; Cooksey, Amanda M.; Castoe, Todd A.; Crawford, Nicholas G.; Densmore, Llewellyn D.; Drew, Jennifer C.; Edwards, Scott V.; Faircloth, Brant C.; Fujita, Matthew K.; Greenwold, Matthew J.; Hoffman, Federico G.; Howard, Jonathan M.; Iguchi, Taisen; Janes, Daniel E.; Khan, Shaid Yar; Kohno, Satomi; deKoning, AP Jason; Lance, Stacey L.; McCarthy, Fiona M.; McCormack, John E.; Merchant, Mark E.; Peterson, Daniel G.; Pollock, David D.; Pourmand, Nader; Raney, Brian J.; Roessler, Kyria A.; Sanford, Jeremy R.; Sawyer, Roger H.; Schmidt, Carl J.; Triplett, Eric W.; Tuberville, Tracey D.; Venegas-Anaya, Miryam D.; Howard, Jason T.; Jarvis, Erich D.; Guillette Jr., Louis J.; Glenn, Travis C.; Green, Richard E.; Ray, David A. (2012)
  • Faircloth, Brant C.; Branstetter, Michael G.; White, Noor D.; Brady, Seán Gary (2015)
    Gaining a genomic perspective on phylogeny requires the collection of data from many putatively independent loci across the genome. Among insects, an increasingly common approach to collecting this class of data involves ...
  • McCormack, John E.; Faircloth, Brant C.; Crawford, Nicholas G.; Gowaty, Patricia Adair; Brumfield, Robb T.; Glenn, Travis C. (2012)
    Phylogenomics offers the potential to fully resolve the Tree of Life, but increasing genomic coverage also reveals conflicting evolutionary histories among genes, demanding new analytical strategies for elucidating a single ...
  • Gilbert, Gregory S.; Ballesteros, Javier O.; Barrios-Rodriguez, Cesar; Bonadies, Ernesto F.; Cedeño-Sánchez, Marjorie L.; Fossatti-Caballero, Nohely; Trejos-Rodríguez, Mariam M.; Pérez-Suñiga, José Moises; Holub-Young, Katharine; Henn, Laura A. W.; Thompson, Jennifer B.; García-López, Cesar G.; Romo, Amanda C.; Johnston, Daniel C.; Barrick, Pablo P.; Jordan, Fulvia A.; Hershcovich, Shiran; Russo, Natalie; Sánchez, Juan David; Fábrega, Juan Pablo; Lumpkin, Raleigh; McWilliams, Hunter A.; Chester, Kathleen N.; Burgos, Alana C.; Wong, E. B.; Diab, Jonathan H.; Renteria, Sonia A.; Harrower, Jennifer T.; Hooton, Douglas A.; Glenn, Travis C.; Faircloth, Brant C.; Hubbell, Stephen P. (2016)
    PREMISE OF THE STUDY: Field methodology and image analysis protocols using acoustic tomography were developed and evaluated as a tool to estimate the amount of internal decay and damage of living trees, with special attention ...

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