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Browsing by Author "Cook, Joseph A."

Browsing by Author "Cook, Joseph A."

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  • The Beringian Coevolution Project: holistic collections of mammals and associated parasites reveal novel perspectives on evolutionary and environmental change in the North 
    Cook, Joseph A.; Galbreath, Kurt E.; Bell, Kayce C.; Campbell, Mariel L.; Carrière, Suzanne; Colella, Jocelyn P.; Dawson, Natalie G.; Dunnum, Jonathan L.; Eckerlin, Ralph P.; Fedorov, Vadim; Greiman, Stephen E.; Haas, Genevieve M. S.; Haukisalmi, Voitto; Henttonen, Heikki; Hope, Andrew G.; Jackson, Donavan; Jung, Thomas S.; Koehler, Anson V.; Kinsella, John M.; Krejsa, Dianna; Kutz, Susan J.; Liphardt, Schuyler; MacDonald, S. O.; Malaney, Jason L.; Makarikov, Arseny; Martin, Jon; McLean, Bryan S.; Mulders, Robert; Nyamsuren, Batsaikhan; Talbot, Sandra L.; Tkach, Vasyl V.; Tsvetkova, Albina; Toman, Heather M.; Waltari, Eric C.; Whitman, Jackson S.; Hoberg, Eric P. (2017)
  • Building an integrated infrastructure for exploring biodiversity: field collections and archives of mammals and parasites 
    Galbreath, Kurt E.; Hoberg, Eric P.; Cook, Joseph A.; Armién, Blas; Bell, Kayce C.; Campbell, Mariel L.; Dunnum, Jonathan L.; Dursahinhan, Altangerel T.; Eckerlin, Ralph P.; Gardner, Scott L.; Greiman, Stephen E.; Henttonen, Heikki; Jiménez, F. Agustín; Koehler, Anson V. A.; Nyamsuren, Batsaikhan; Tkach, Vasyl V.; Torres-Pérez, Fernando; Tsvetkova, Albina; Hope, Andrew G. (2019)
    Museum specimens play an increasingly important role in predicting the outcomes and revealing the consequences of anthropogenically driven disruption of the biosphere. As ecological communities respond to ongoing environmental ...
  • DNA methylation networks underlying mammalian traits 
    Haghani, Amin; Li, Caesar Z.; Robeck, Todd R.; Zhang, Joshua; Lu, Ake T.; Ablaeva, Julia; Acosta-Rodriguez, Victoria A.; Adams, Danielle M.; Alagaili, Abdulaziz N.; Almunia, Javier; Aloysius, Ajoy; Amor, Nabil M. S.; Ardehali, Reza; Arneson, Adriana; Baker, C. Scott; Banks, Gareth; Belov, Katherine; Bennett, Nigel C.; Black, Peter; Blumstein, Daniel T.; Bors, Eleanor K.; Breeze, Charles E.; Brooke, Robert T.; Brown, Janine L.; Carter, Gerald; Caulton, Alex; Cavin, Julie M.; Chakrabarti, Lisa; Chatzistamou, Ioulia; Chavez, Andreas S.; Chen, Hao; Cheng, Kaiyang; Chiavellini, Priscila; Choi, Oi-Wa; Clarke, Shannon; Cook, Joseph A.; Cooper, Lisa N.; Cossette, Marie-Laurence; Day, Joanna; DeYoung, Joseph; Dirocco, Stacy; Dold, Christopher; Dunnum, Jonathan L.; Ehmke, Erin E.; Emmons, Candice K.; Emmrich, Stephan; Erbay, Ebru; Erlacher-Reid, Claire; Faulkes, Chris G.; Fei, Zhe; Ferguson, Steven H.; Finno, Carrie J.; Flower, Jennifer E.; Gaillard, Jean-Michel; Garde, Eva; Gerber, Livia; Gladyshev, Vadim N.; Goya, Rodolfo G.; Grant, Matthew J.; Green, Carla B.; Hanson, M. Bradley; Hart, Daniel W.; Haulena, Martin; Herrick, Kelsey; Hogan, Andrew N.; Hogg, Carolyn J.; Hore, Timothy A.; Huang, Taosheng; Izpisua Belmonte, Juan Carlos; Jasinska, Anna J.; Jones, Gareth; Jourdain, Eve; Kashpur, Olga; Katcher, Harold; Katsumata, Etsuko; Kaza, Vimala; Kiaris, Hippokratis; Kobor, Michael S.; Kordowitzki, Pawel; Koski, William R.; Kruetzen, Michael; Kwon, Soo Bin; Larison, Brenda; Lee, Sang-Goo; Lehmann, Marianne; Lemaitre, Jean-Francois; Levine, Andrew J.; Li, Xinmin; Li, Cun; Lim, Andrea R.; Lin, David T. S.; Lindemann, Dana M.; Liphardt, Schuyler W.; Little, Thomas J.; Macoretta, Nicholas; Maddox, Dewey; Matkin, Craig O.; Mattison, Julie A.; McClure, Matthew; Mergl, June; Meudt, Jennifer J.; Montano, Gisele A.; Mozhui, Khyobeni; Munshi-South, Jason; Murphy, William J.; Naderi, Asieh; Nagy, Martina; Narayan, Pritika; Nathanielsz, Peter W.; Nguyen, Ngoc B.; Niehrs, Christof; Nyamsuren, Batsaikhan; O'Brien, Justine K.; Ginn, Perrie O'Tierney; Odom, Duncan T.; Ophir, Alexander G.; Osborn, Steve; Ostrander, Elaine A.; Parsons, Kim M.; Paul, Kimberly C.; Pedersen, Amy B.; Pellegrini, Matteo; Peters, Katharina J.; Petersen, Jessica L.; Pietersen, Darren W.; Pinho, Gabriela M.; Plassais, Jocelyn; Poganik, Jesse R.; Prado, Natalia A.; Reddy, Pradeep; Rey, Benjamin; Ritz, Beate R.; Robbins, Jooke; Rodriguez, Magdalena; Russell, Jennifer; Rydkina, Elena; Sailer, Lindsay L.; Salmon, Adam B.; Sanghavi, Akshay; Schachtschneider, Kyle M.; Schmitt, Dennis; Schmitt, Todd; Schomacher, Lars; Schook, Lawrence B.; Sears, Karen E.; Seifert, Ashley W.; Shafer, Aaron B. A.; Shindyapina, Anastasia V.; Simmons, Melanie; Singh, Kavita; Sinha, Ishani; Slone, Jesse; Snell, Russel G.; Soltanmohammadi, Elham; Spangler, Matthew L.; Spriggs, Maria; Staggs, Lydia; Stedman, Nancy; Steinman, Karen J.; Stewart, Donald T.; Sugrue, Victoria J.; Szladovits, Balazs; Takahashi, Joseph S.; Takasugi, Masaki; Teeling, Emma C.; Thompson, Michael J.; Van Bonn, Bill; Vernes, Sonja C.; Villar, Diego; Vinters, Harry V.; Vu, Ha; Wallingford, Mary C.; Wang, Nan; Wilkinson, Gerald S.; Williams, Robert W.; Yan, Qi; Yao, Mingjia; Young, Brent G.; Zhang, Bohan; Zhang, Zhihui; Zhao, Yang; Zhao, Peng; Zhou, Wanding; Zoller, Joseph A.; Ernst, Jason; Seluanov, Andrei; Gorbunova, Vera; Yang, X. William; Raj, Ken; Horvath, Steve (2023)
    Using DNA methylation profiles (n = 15,456) from 348 mammalian species, we constructed phyloepigenetic trees that bear marked similarities to traditional phylogenetic ones. Using unsupervised clustering across all samples, ...
  • Expert range maps of global mammal distributions harmonised to three taxonomic authorities 
    Marsh, Charles J.; Sica, Yanina V.; Burgin, Connor J.; Dorman, Wendy A.; Anderson, Robert C.; del Toro Mijares, Isabel; Vigneron, Jessica G.; Barve, Vijay; Dombrowik, Victoria L.; Duong, Michelle; Guralnick, Robert; Hart, Julie A.; Maypole, J. Krish; McCall, Kira; Ranipeta, Ajay; Schuerkmann, Anna; Torselli, Michael A.; Lacher, Thomas, Jr.; Mittermeier, Russell A.; Rylands, Anthony B.; Sechrest, Wes; Wilson, Don E.; Abba, Agustin M.; Aguirre, Luis F.; Arroyo-Cabrales, Joaquin; Astua, Diego; Baker, Andrew M.; Braulik, Gill; Braun, Janet K.; Brito, Jorge; Busher, Peter E.; Burneo, Santiago F.; Camacho, M. Alejandra; Cavallini, Paolo; de Almeida Chiquito, Elisandra; Cook, Joseph A.; Cserkesz, Tamas; Csorba, Gabor; Cuellar Soto, Erika; da Cunha Tavares, Valeria; Davenport, Tim R. B.; Demere, Thomas; Denys, Christiane; Dickman, Christopher R.; Eldridge, Mark D. B.; Fernandez-Duque, Eduardo; Francis, Charles M.; Frankham, Greta; Franklin, William L.; Freitas, Thales; Friend, J. Anthony; Gadsby, Elizabeth L.; Garbino, Guilherme S. T.; Gaubert, Philippe; Giannini, Norberto; Giarla, Thomas; Gilchrist, Jason S.; Gongora, Jaime; Goodman, Steven M.; Gursky-Doyen, Sharon; Hacklander, Klaus; Hafner, Mark S.; Hawkins, Melissa; Helgen, Kristofer M.; Heritage, Steven; Hinckley, Arlo; Hintsche, Stefan; Holden, Mary; Holekamp, Kay E.; Honeycutt, Rodney L.; Huffman, Brent A.; Humle, Tatyana; Hutterer, Rainer; Ibanez Ulargui, Carlos; Jackson, Stephen M.; Janecka, Jan; Janecka, Mary; Jenkins, Paula; Juskaitis, Rimvydas; Juste, Javier; Kays, Roland; Kilpatrick, C. William; Kingston, Tigga; Koprowski, John L.; Krystufek, Boris; Lavery, Tyrone; Lee, Thomas E., Jr.; Leite, Yuri L. R.; Novaes, Roberto Leonan M.; Lim, Burton K.; Lissovsky, Andrey; Lopez-Antonanzas, Raquel; Lopez-Baucells, Adria; MacLeod, Colin D.; Maisels, Fiona G.; Mares, Michael A.; Marsh, Helene; Mattioli, Stefano; Meijaard, Erik; Monadjem, Ara; Morton, F. Blake; Musser, Grace; Nadler, Tilo; Norris, Ryan W.; Ojeda, Agustina; Ordonez-Garza, Nicte; Pardinas, Ulyses F. J.; Patterson, Bruce D.; Pavan, Ana; Pennay, Michael; Pereira, Calebe; Prado, Joyce; Queiroz, Helder L.; Richardson, Matthew; Riley, Erin P.; Rossiter, Stephen J.; Rubenstein, Daniel I.; Ruelas, Dennisse; Salazar-Bravo, Jorge; Schai-Braun, Stephanie; Schank, Cody J.; Schwitzer, Christoph; Sheeran, Lori K.; Shekelle, Myron; Shenbrot, Georgy; Soisook, Pipat; Solari, Sergio; Southgate, Richard; Superina, Mariella; Taber, Andrew B.; Talebi, Mauricio; Taylor, Peter; Vu Dinh, Thong; Ting, Nelson; Tirira, Diego G.; Tsang, Susan; Turvey, Samuel T.; Valdez, Raul; Van Cakenberghe, Victor; Veron, Geraldine; Wallis, Janette; Wells, Rod; Whittaker, Danielle; Williamson, Elizabeth A.; Wittemyer, George; Woinarski, John; Zinner, Dietmar; Upham, Nathan S.; Jetz, Walter (2022)
    Aim: Comprehensive, global information on species' occurrences is an essential biodiversity variable and central to a range of applications in ecology, evolution, biogeography and conservation. Expert range maps often ...
  • From Museum Cases to the Classroom: Emerging Opportunities for Specimen-based Education 
    Cook, Joseph A.; Lacey, Eileen A.; Ickert-Bond, Stefanie M.; Hoberg, Eric P.; Galbreath, Kurt E.; Bell, Kayce C.; Greiman, Stephen E.; McLean, Bryan S.; Edwards, Scott (2016)
  • Impacts Of Inference Method And Dataset Filtering On Phylogenomic Resolution In A Rapid Radiation of Ground Squirrels (Xerinae: Marmotini) 
    McLean, Bryan S.; Bell, Kayce C.; Allen, Julie M.; Helgen, Kristofer M.; Cook, Joseph A. (2019)
    Phylogenomic datasets are illuminating many areas of the Tree of Life. However, the large size of these datasets alone may be insufficient to resolve problematic nodes in the most rapid evolutionary radiations, because ...
  • The next generation of natural history collections 
    Schindel, David E.; Cook, Joseph A. (2018)
    The last 50 years have witnessed rapid changes in the ways that natural history specimens are collected, preserved, analyzed, and documented. Those changes have produced unprecedented access to specimens, images, and data ...
  • Obituary: James Smith Findley (1926-2018) 
    Cook, Joseph A.; Gannon, William L.; Mares, Michael A.; Petersen, Karen E.; Wilson, Don E. (2019)
  • Rapid divergence and gene flow at high latitudes shape the history of Holarctic ground squirrels (Urocitellus) 
    McLean, Bryan S.; Jackson, Donavan J.; Cook, Joseph A. (2016)
    Across the animal tree of life, the prevalence and evolutionary role(s) of hybridization remain incompletely understood. Rapidly radiating clades can serve as important systems for investigating these issues; however, such ...
  • Specimen collection is essential for modern science 
    Nachman, Michael W.; Beckman, Elizabeth J.; Bowie, Rauri Ck; Cicero, Carla; Conroy, Chris J.; Dudley, Robert; Hayes, Tyrone B.; Koo, Michelle S.; Lacey, Eileen A.; Martin, Christopher H.; McGuire, Jimmy A.; Patton, James L.; Spencer, Carol L.; Tarvin, Rebecca D.; Wake, Marvalee H.; Wang, Ian J.; Achmadi, Anang; Álvarez-Castañeda, Sergio Ticul; Andersen, Michael J.; Arroyave, Jairo; Austin, Christopher C.; Barker, F. K.; Barrow, Lisa N.; Barrowclough, George F.; Bates, John; Bauer, Aaron M.; Bell, Kayce C.; Bell, Rayna C.; Bronson, Allison W.; Brown, Rafe M.; Burbrink, Frank T.; Burns, Kevin J.; Cadena, Carlos Daniel; Cannatella, David C.; Castoe, Todd A.; Chakrabarty, Prosanta; Colella, Jocelyn P.; Cook, Joseph A.; Cracraft, Joel L.; Davis, Drew R.; Davis Rabosky, Alison R.; D’Elía, Guillermo; Dumbacher, John P.; Dunnum, Jonathan L.; Edwards, Scott V.; Esselstyn, Jacob A.; Faivovich, Julián; Fjeldså, Jon; Flores-Villela, Oscar; Ford, Kassandra; Fuchs, Jérôme; Fujita, Matthew K.; Good, Jeffrey M.; Greenbaum, Eli; Greene, Harry W.; Hackett, Shannon; Hamidy, Amir; Hanken, James; Haryoko, Tri; Hawkins, Melissa Tr; Heaney, Lawrence R.; Hillis, David M.; Hollingsworth, Bradford D.; Hornsby, Angela D.; Hosner, Peter A.; Irham, Mohammad; Jansa, Sharon; Jiménez, Rosa Alicia; Joseph, Leo; Kirchman, Jeremy J.; LaDuc, Travis J.; Leaché, Adam D.; Lessa, Enrique P.; López-Fernández, Hernán; Mason, Nicholas A.; McCormack, John E.; McMahan, Caleb D.; Moyle, Robert G.; Ojeda, Ricardo A.; Olson, Link E.; Kin Onn, Chan; Parenti, Lynne R.; Parra-Olea, Gabriela; Patterson, Bruce D.; Pauly, Gregory B.; Pavan, Silvia E.; Peterson, A. T.; Poe, Steven; Rabosky, Daniel L.; Raxworthy, Christopher J.; Reddy, Sushma; Rico-Guevara, Alejandro; Riyanto, Awal; Rocha, Luiz A.; Ron, Santiago R.; Rovito, Sean M.; Rowe, Kevin C.; Rowley, Jodi; Ruane, Sara; Salazar-Valenzuela, David; Shultz, Allison J.; Sidlauskas, Brian; Sikes, Derek S.; Simmons, Nancy B.; Stiassny, Melanie L. J.; Streicher, Jeffrey W.; Stuart, Bryan L.; Summers, Adam P.; Tavera, Jose; Teta, Pablo; Thompson, Cody W.; Timm, Robert M.; Torres-Carvajal, Omar; Voelker, Gary; Voss, Robert S.; Winker, Kevin; Witt, Christopher; Wommack, Elizabeth A.; Zink, Robert M. (2023)
  • Sympatric Parasites Have Similar Host-Associated, but Asynchronous, Patterns of Diversification 
    Bell, Kayce C.; Demboski, John R.; Cook, Joseph A. (2018)
    Parasitism is a common symbiotic interaction across diverse natural systems. Using a comparative evolutionary approach, we investigated the contributions of both host phylogeny and abiotic factors toward diversification ...
  • Target gene enrichment in the cyclophyllidean cestodes, the most diverse group of tapeworms 
    Yuan, Hao; Jiang, Jiamei; Jiménez, Francisco Agustín; Hoberg, Eric P.; Cook, Joseph A.; Galbreath, Kurt E.; Li, Chenhong (2016)
  • Temporal and spatial mosaics: deep host association and shallow geographic drivers shape genetic structure in a widespread pinworm, <I>Rauschtineria eutamii</I> (Nematoda: Oxyuridae) 
    Bell, Kayce C.; Calhoun, Kendall L.; Hoberg, Eric P.; Demboski, John R.; Cook, Joseph A. (2016)
  • Transformational Principles for NEON Sampling of Mammalian Parasites and Pathogens: A Response to Springer and Colleagues 
    Cook, Joseph A.; Greiman, Stephen E.; Agosta, Salvatore J.; Anderson, Robert P.; Arbogast, Brian S.; Baker, Robert J.; Boeger, Walter; Bradley, Robert D.; Brooks, Daniel R.; Cole, Rebecca; Demboski, John R.; Dobson, Andrew P.; Dunnum, Jonathan L.; Eckerlin, Ralph P.; Esselstyn, Jacob; Galbreath, Kurt E.; Hawdon, John; Hoekstra, Hopi E.; Kutz, Susan J.; Light, Jessica E.; Olson, Link E.; Patterson, Bruce D.; Patton, James L.; Phillips, Anna J.; Rickart, Eric; Rogers, Duke S.; Siddall, Mark E.; Tkach, Vasyl V.; Hoberg, Eric P. (2016)
  • Why we need a centralized repository for isotopic data 
    Pauli, Jonathan N.; Newsome, Seth D.; Cook, Joseph A.; Harrod, Chris; Steffan, Shawn A.; Baker, Christopher J. O.; Ben-David, Merav; Bloom, David; Bowen, Gabriel J.; Cerling, Thure E.; Cicero, Carla; Cook, Craig; Dohm, Michelle; Dharampal, Prarthana S.; Graves, Gary R.; Gropp, Robert; Hobson, Keith A.; Jordan, Chris; MacFadden, Bruce; Birchs, Suzanne Pilaar; Poelen, Jorrit; Ratnasingham, Sujeevan; Russell, Laura; Stricker, Craig A.; Uhen, Mark D.; Yarnes, Christopher T.; Hayden, Brian (2017)

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