Accuracy and Precision of Tidal Wetland Soil Carbon Mapping in the Conterminous United States: Public Soil Carbon Data Release Version 1

2018

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Data table(s) 5

Other entity(ies) 0

Abstract

Tidal wetlands produce long-term soil organic carbon (C) stocks. Thus for carbon accounting purposes, we need accurate and precise information on the magnitude and spatial distribution of those stocks. We assembled and analyzed an unprecedented soil core dataset, and tested three strategies for mapping carbon stocks: applying the average value from the synthesis to mapped tidal wetlands, applying models fit using empirical data and applied using soil, vegetation and salinity maps, and relying on independently generated soil carbon maps. Soil carbon stocks were far lower on average and varied less spatially and with depth than stocks calculated from available soils maps. Further, variation in carbon density was not well-predicted based on climate, salinity, vegetation, or soil classes. Instead, the assembled dataset showed that carbon density across the conterminous united states (CONUS) was normally distributed, with a predictable range of observations. We identified the simplest strategy, applying mean carbon density (27.0 kgC m<sup>-3</sup>), as the best performing strategy, and conservatively estimated that the top meter of CONUS tidal wetland soil contains 0.72 petagrams C. This strategy could provide standardization in CONUS tidal carbon accounting until such a time as modeling and mapping advancements can quantitatively improve accuracy and precision. This data release includes the soil carbon data currently considered public by the data submittors. Additional detail can be found in the publication. Holmquist JR et al. (2018). Accuracy and Precision of Tidal Wetlands Soil Carbon Mapping in the Conterminous United States. Scientific Reports. DOI:10.1038/s41598-018-26948-7. Funding Sources: NASA Carbon Monitoring System [NNH14AY67I], National Science Foundation [DEB-1655622], Smithsonian Institution, USGS Landcarbon Program.

Metadata Provider

 

Creators

  • James  Holmquist  HolmquistJ@si.edu

Associated parties

  • James  Holmquist  HolmquistJ@si.edu
  • Lisamarie  Windham-Myers  lwindham-myers@usgs.gov
  • Norman  Bliss  bliss@usgs.gov
  • Stephen  Crooks  steve.crooks.bc@gmail.com
  • James  Morris  morris@inlet.geol.sc.edu
  • J  Megonigal  MegonigalP@si.edu
  • Tiffany  Troxler  troxlert@fiu.edu
  • Donald  Weller  wellerd@si.edu
  • John  Callaway  callaway@usfca.edu
  • Judith  Drexler  jdrexler@usgs.gov
  • Matthew  Ferner  mferner@sfsu.edu
  • Meagan  Gonneea  mgonneea@usgs.gov
  • Kevin  Kroeger  kkroeger@usgs.gov
  • Lisa  Schile-Beers  lmschile@gmail.com
  • Isa  Woo  iwoo@usgs.gov
  • Kevin  Buffington  kbuffington@usgs.gov
  • Brandon  Boyd  Brandon.M.Boyd@erdc.dren.mil
  • Joshua  Breithaupt  jlbreith@mail.usf.edu
  • Lauren  Brown  lnbrown@ucla.edu
  • Nicole  Dix  Nikki.Dix@dep.state.fl.us
  • Lyndie  Hice  lhice-dunton@ene.com
  • Benjamin  Horton  bphorton@marine.rutgers.edu
  • Glen  MacDonald  macdonal@geog.ucla.edu
  • Ryan  Moyer  Ryan.Moyer@myfwc.com
  • William  Reay  wreay@vims.edu
  • Timothy  Shaw  tshaw@marine.rutgers.edu
  • Erik  Smith  erik@belle.baruch.sc.edu
  • Joseph  Smoak  smoak@mail.usf.edu
  • Christopher  Sommerfield  cs@udel.edu
  • Karen  Thorne  KThorne@USGS.gov
  • David  Velinsky  djv23@drexel.edu
  • Elizabeth  Watson  elizabeth.b.watson@gmail.com
  • Kristen  Grimes  kristin.wilson@uvi.edu
  • Mark  Woodrey  msw103@msstate.edu

Keywords

Temporal coverage

Start date End date
1990 2017

Geographic coverage

Taxonomic coverage

Rank name Value
Species Agrostis spp.
Species Alternanthera philoxeroides
Species Amaranthus cannabinus
Species Ambrosia trifida
Species Arrow arum
Species Athyrium filix-femina
Species Avicennia germinans
Species Baccharis halimifolia
Species Batis maritima
Species Bidens laevis
Species Bolboschoenus maritimus
Species Carex lyngbyei
Species Cornus sericea
Species Cuscuta salina
Species Distichlis spicata
Species Echinochloa spp.
Species Eleocharis palustris
Species Eleocharis spp.
Species Frankenia salina
Species Gaultheria shallon
Species Grindelia stricta
Species Hibiscus spp.
Species Impatiens capensis
Species Iva frutescens
Species Jaumea carnosa
Species Juncus balticus
Species Juncus roemerianus
Species Lonicera involucrata
Species Ludwigia spp.
Species Lysichiton americanus
Species Myrica gale
Species Nuphar advena
Species Nyssa aquatica
Species Oenanthe sarmentosa
Species Panicum hemitomon
Species Paspalum vaginatum
Species Peltandra virginica
Species Phalaris arundinacea
Species Phragmites australis
Species Picea sitchensis
Species Polygonum arifolium
Species Polygonum punctatum
Species Polygonum sagittatum
Species Polygonum spp.
Species Rhizophora mangle
Species Rosa californica
Species Rosa nutkana
Species Rosa pisocarpa
Species Rubus spectabilis
Species Rubus ursinus
Species Sagittaria latifolia
Species Salix lasiolepis
Species Sagittaria lancifolia
Species Salicornia pacifica
Species Salicornia virginica
Species Scirpus acutus
Species Scirpus americanus
Species Schoenoplectus californicus
Species Schoenoplectus tabernaemontani
Species Spartina alterniflora
Species Spartina cynosuroides
Species Spiraea douglasii
Species Spartina foliosa
Species Spartina patens
Species Spartina spp.
Species Taxodium distichum
Species Triglochin maritima
Species Trapa natis
Species Typa angustifolia
Species Typa domingensis
Species Typha latifolia
Species Typha spp.
Species Zizania aquatica
Species Zizaniopsis milaceae

Data tables


V1_Holmquist_2018_methods_data , Methods information for each study (Version 1)


Physical: V1_Holmquist_2018_methods_data.csv
attribute name definition format, unit or codes
study_id Unique identifier for the study made up of the first author's family name, as well as the second author's or 'et al.' if more than three, then publication year spearated by underscores. See worksCited.bib for more detail.
publication_type Code indicating the type of publication the study originates from. dissertation = Source was a Ph.D. dissertation. government report = Source was a government report. peer reviewed publication = Source was a peer reviewed publication. private sector report = Source was a private sector report. publically available dataset = Source was a publically available dataset. thesis = Source was a master's thesis. 
n Number of cores per study. number
coring_method Code indicating what type of device was used to collect soil depth profiles. gouge auger = A half cylinder coring device in which the coring section is open, not sealed off by a fin. hargas corer = A large diameter (>10 cm) coring device consisting of a tube, piston, and a cutting head. mcauley corer = A half cylinder coring device with the coring section sealed off by a fin attached to a rotating pivot point. mccaffrey peat cutter = U-shaped blade that extracts a core by cutting down through peat. none specified = No coring device was specified. other shallow corer = Any other type of coring device typically taking cores shallower than 30 centimeters. piston corer = A device that extrudes core into tube upward with a plunger. push core = Any number of coring types involving driving a tube into the sediment to recover a core. pvc and hammer = PVC pipe was driven into the sediment with a hammer to recover a core. russian corer = A half cylinder coring device with the coring section sealed off by a fin attached to a rotating pivot point. vibracore = A technique involving collecting a core by sinking a continuous pipe into sediment attaching a source of vibration, then recovering using a winch and pulley. 
roots_flag Any notable comments on how the authors either included or excluded live roots from carbon assesments. roots and rhizomes included = Roots and rhizomes were included in dry bulk density and or organic matter and carbon measurements. roots seperated using floation = Roots and rhizomes were separated from soil using floatation before dry bulk density and or organic matter and carbon measurements. 
compaction_flag Any notable comments on how the authors qualified or quantified compaction of the core. < 10-20% = Compaction was less than 10 to 20% of the core depth. corer limits compaction = Authors specified that the coring device's design minimized compaction. no obvious compaction = Authors observed no obvious compaction. 
dry_bulk_density_temperature Temperature at which samples were dried to measure dry bulk density. celsius
dry_bulk_density_time Time over which samples were dried to measure dry bulk density. hour
dry_bulk_density_flag Any notable comments on how the authors quantified dry bulk density. air dried to constant mass = Methodology specified that samples were air dried to a constant mass. duplicate measurements = Methodology specified that the reported values are the averages of duplicated measurements. estimated from loss on ignition and particle densities of mineral and organic solids = Bulk density was not measured, but was modeled from loss on ignition and assumptions about the particle densities of organic and inorganic matter. freeze dried = Bulk density was measured on freeze dried samples. no details = No additional details regarding bulk density methodology were provided. removed non structural water = Bulk density methodology did not specify drying temperature or length, only that non-strucural water was removed. time approximate = Bulk density time recorded herin is an approximate estimate. time not specified = Bulk density time was not specified. to constant mass = Bulk density methodology did not specify drying temperature or length, only that samples were dried to a constant mass. 
loss_on_ignition_temperature Temperature at which samples were combusted to estimate fraction organic matter. celsius
loss_on_ignition_time Time over which samples were combusted to estimate fraction organic matter. hour
loss_on_ignition_flag Any notable comments on how the authors estimated organic matter fraction using loss on ignition. duplicate measurements = Methodology specified that the reported values are the averages of duplicated measurements. ground and sieved = Methodology specified that the samples were ground and seived before loss on ignition. no details = No additional details regarding loss on ignition methodology were provided. time not specified = No additional details regarding loss on ignition duration were provided. 
carbon_measured_or_modeled Code indicating whether fraction carbon was measured or estimated as a function of organic matter. measured = Fraction carbon was measured as opposed to modeled. modeled = Fraction carbon was modeled as opposed to measured. 
carbonates_removed Whether or not carbonates were removed prior to calculating fraction organic carbon. FALSE = Carbonates were not removed before measuring organic carbon. TRUE = Carbonates were removed before measuring organic carbon. 
carbonate_removal_method The method used to remove carbonates prior to measuring fraction carbon. 1N H3PO4 = I normal phosphoric acid was used to remove carbonates. direct acid treatment = Carbonates were removed using direct application of dilute acid. HCl fumigation = Carbonates were removed by fumigating with concentrated hydrochloric acid. low carbonate soil = Organic carbon fraction were measured without removing carbonates becasuse assuming carbonate content of the soil type was minimal. none specified = Carbonate removal methodology was not specified. 
fraction_carbon_flag Any notable comments on how the authors measured fraction carbon. extrapolated from subset of samples = A regression model fit using a subset of measurements was used to predict fraction carbon as a funciton of fraction organic matter. fumigated to remove microbeal biomass = Authors report removing microbeal biomass with acid fumigation. no details = No additional detals were provided regarding fraction carbon methodologies. replicate samples = Methodology specified that the reported values are the averages of duplicated measurements. 

V1_Holmquist_2018_core_data , Soil core sub-site information (Version 1)


Physical: V1_Holmquist_2018_core_data.csv
attribute name definition format, unit or codes
study_id Unique identifier for the study made up of the first author's family name, as well as the second author's or 'et al.' if more than three, then publication year spearated by underscores. See worksCited.bib for more detail.
core_id Author defined unique identifier assiged to a core.
core_latitude Positional latitude of the core decimal degrees (World Geodetic System 1988 [WGS1988]). degree
core_longitude Positional longitude of the core decimal degrees (World Geodetic System 1988 [WGS1988]). degree
position_code Code assigned to rank the quality of latitude and longitude information extracted from the source. a = Latitude and longitude were likely from a high quality source. a1 = Latitude and longitude from handheld GPS or better. a2 = Latitude and longitude were likely high quality but may refer to a general area rather than individual core location. b = Latitude and longitude represented coarse and general site coordinates. c = Latitude and longitude were extracted from a map figure. c1 = Latitude and longitude were extracted from a relatively high quality map figure. c2 = Latitude and longitude were extracted from a relatively low quality map figure. 
core_elevation Elevation of the coring site relative to North American Vertical Datum 1988 (NAVD88). meter
salinity_code Code indicating broad salinity of the coring site. Bra = Brackish (0.5 to 30 parts per thousand salinity). Bra Fre = Brackish to Fresh (< 30 parts per thousand salinity). Bra Sal = Brackis to Saline (> 0.5 parts per thousand salinity). Del = Deltaic (Recieves primariy freshwater input from river discharge). Est = Estuarine (5 to 35 parts per thousand salinity). Fre = Freshwater (< 0.5 parts per thousand salinity). Int = Intermediate salinity (Salinity is somewhere between fully fresh and fully saline). Mes = Mesohaline (5 to 18 parts per thousand salinity). Oli = Oligohaline (0.5 to 5 parts per thousand salinity). Pol = Polyhaline (18 to 30 parts per thousand salinity). Riv = Riverine (Salinity is dominated by freswater river discharge). Sal = Saline (30 to 50 parts per thousand salinity). 
vegetation_code Code indicating broad vegetation categories at the coring site. EM = Dominated by emergent non woody vasular plant biomass. FO = Dominated by forested biomass. FO/SS = Dominated by forested to scrub/shrub biomass. 
inundation_class Code based on userent indicating how often the coring location is inundated. High = Core was collected from the high zone of the tidal frame. Hollow = Core was collected from a low elevation hollow zone. Hummock = Core was collected from a high elevation hummock zone. Levee = Core was collected from a high elevation built up edge of a marsh. Low = Core was collected from the low zone of the tidal frame. Mid = Core was collected from the mid zone of the tidal frame. Plain = Core was collected from a low elevation interior of a marsh. River's Edge = Core was collected from a river's edge. 
core_length_flag Indicated whether or not the coring team believes they recovered a full sediment profile, down to bedrock, or other non-marsh interface. core depth limited by length of corer = The total depth of the core was limited by the length of the coring device. core depth represents deposit depth = Authors report that the depth of the core represents the depth of the wetland soil deposit. not specified = Authors did not specify whether or not the depth of the core represents the depth of the wetland soil deposit. 

V1_Holmquist_2018_depth_series_data , Soil core depth series information (Version 1)


Physical: V1_Holmquist_2018_depth_series_data.csv
attribute name definition format, unit or codes
study_id Unique identifier for the study made up of the first author's family name, as well as the second author's or 'et al.' if more than three, then publication year spearated by underscores. See worksCited.bib for more detail.
core_id Author defined unique identifier assiged to a core.
depth_min Minimum depth of a sampling increment. centimeter
depth_max Maximum depth of a sampling increment. centimeter
dry_bulk_density Dry mass per unit volume of a soil sample. gramsPerCubicCentimeter
fraction_organic_matter Mass of organic matter relative to sample dry mass. dimensionless
fraction_carbon Mass of carbon relative to sample dry mass. dimensionless
fraction_carbon_type Code assigned to specify the type of measurement fraction_carbon represents. fraction_organic_carbon = Author specified that fraction carbon measurements were of organic carbon. fraction_total_carbon = Author specified that fraction carbon measurements were of total carbon. 

V1_Holmquist_2018_species_data , Dominant species present at core locations (Version 1)


Physical: V1_Holmquist_2018_species_data.csv
attribute name definition format, unit or codes
study_id Unique identifier for the study made up of the first author's family name, as well as the second author's or 'et al.' if more than three, then publication year spearated by underscores. See worksCited.bib for more detail.
core_id Author defined unique identifier assiged to a core.
species_code Code associated with a species or a vegetation assembelage. Mix = Mix of multiple species. Swamp = Louisiana freshwater forested wetlands. UnVeg = Unvegetated. AgSp = Agrostis spp. AlPh = Alternanthera philoxeroides. AmCa = Amaranthus cannabinus. AmTr = Ambrosia trifida. ArAr = Arrow arum. AtFi = Athyrium filix-femina. AvGe = Avicennia germinans. BaHa = Baccharis halimifolia. BaMa = Batis maritima. BiLa = Bidens laevis. BoMa = Bolboschoenus maritimus. CaLy = Carex lyngbyei. CoSe = Cornus sericea. CuSa = Cuscuta salina. DiSp = Distichlis spicata. EcSpp = Echinochloa spp. ElPa = Eleocharis palustris. ElSpp = Eleocharis spp. FrSa = Frankenia salina. GaSh = Gaultheria shallon. GrSt = Grindelia stricta. HiSpp = Hibiscus spp. ImCa = Impatiens capensis. IvFr = Iva frutescens. JaCa = Jaumea carnosa. JuBa = Juncus balticus. JuRo = Juncus roemerianus. LoIn = Lonicera involucrata. LuSpp = Ludwigia spp. LyAm = Lysichiton americanus. MyGa = Myrica gale. NuAd = Nuphar advena. NyAq = Nyssa aquatica. OeSa = Oenanthe sarmentosa. PaHe = Panicum hemitomon. PaVa = Paspalum vaginatum. PeVi = Peltandra virginica. PhAr = Phalaris arundinacea. PhAu = Phragmites australis. PiSi = Picea sitchensis. PoAr = Polygonum arifolium. PoPu = Polygonum punctatum. PoSa = Polygonum sagittatum. PoSpp = Polygonum spp. RiMa = Rhizophora mangle. RoCa = Rosa californica. RoNu = Rosa nutkana. RoPi = Rosa pisocarpa. RuSp = Rubus spectabilis. RuUr = Rubus ursinus. SaLa = Sagittaria latifolia. SaLas = Salix lasiolepis. SaLan = Sagittaria lancifolia. SaPa = Salicornia pacifica. SaVi = Salicornia virginica. ScAc = Scirpus acutus. ScAm = Scirpus americanus. ScCa = Schoenoplectus californicus. ScTa = Schoenoplectus tabernaemontani. SpAl = Spartina alterniflora. SpCy = Spartina cynosuroides. SpDo = Spiraea douglasii. SpFo = Spartina foliosa. SpPa = Spartina patens. SpSpp = Spartina spp. TaDi = Taxodium distichum. TrMa = Triglochin maritima. TrNa = Trapa natis. TyAg = Typa angustifolia. TyDo = Typa domingensis. TyLa = Typha latifolia. TySpp = Typha spp. ZiAq = Zizania aquatica. ZiMi = Zizaniopsis milaceae. 

V1_Holmquist_2018_impact_data , List of anthropogenic impacts at core locations (Version 1)


Physical: V1_Holmquist_2018_impact_data.csv
attribute name definition format, unit or codes
study_id Unique identifier for the study made up of the first author's family name, as well as the second author's or 'et al.' if more than three, then publication year spearated by underscores. See worksCited.bib for more detail.
core_id Author defined unique identifier assiged to a core.
impact_code Code indicating any major anthropogenic impacts historically and currently affecting the coring location. Can = Canalled. Dik = Diked. Dit = Ditched. Eut = Eutrophic. Imp = Impounded. Man = Managed. Nat = Natural. Res = Restoring. SalImp = Salt impacted. 

Custom units

unit name parent SI unit unit type description

Other entities

Intellectual Rights

This dataset is listed under a Creative Commons BY 4.0 and can be used with attribution. https://creativecommons.org/licenses/by/4.0/. Users should take care to credit both this synthesis effort and all primary sources listed herein.